11HV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_11HV_001 | 1/28/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.1 | |
| HL_11HV_002 | 1/28/68:73 | No text annotation | homologous HL_8GLP_002 HL_23875.1 | |
| HL_11HV_003 | 1/28/89:95 | No text annotation | homologous HL_9AXU_003 HL_76371.4 | |
| HL_11HV_004 | 1/28/132:136 | No text annotation | ||
| HL_11HV_005 | 1/28/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.5 | |
| HL_11HV_006 | 1/28/222:226 | No text annotation | geometric HL_8GLP_006 HL_75660.10 | |
| HL_11HV_007 | 1/28/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.6 | |
| HL_11HV_008 | 1/28/289:298 | No text annotation | homologous HL_9PN5_008 HL_63894.4 | |
| HL_11HV_009 | 1/28/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.4 | |
| HL_11HV_010 | 1/28/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.6 | |
| HL_11HV_011 | 1/28/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.6 | |
| HL_11HV_012 | 1/28/962:970 | No text annotation | ||
| HL_11HV_013 | 1/28/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.7 | |
| HL_11HV_014 | 1/28/1389:1394 | No text annotation | homologous HL_8GLP_018 HL_34789.6 | |
| HL_11HV_015 | 1/28/1479:1486 | No text annotation | ||
| HL_11HV_017 | 1/28/1593:1602 | No text annotation | homologous HL_8GLP_023 HL_50204.3 | |
| HL_11HV_018 | 1/28/1627:1635 | No text annotation | homologous HL_8GLP_024 HL_28253.1 | |
| HL_11HV_019 | 1/28/1675:1680 | No text annotation | homologous HL_9H3G_028 HL_27530.3 | |
| HL_11HV_021 | 1/28/1816:1823 | No text annotation | homologous HL_8GLP_027 HL_63894.4 | |
| HL_11HV_022 | 1/28/1864:1870 | No text annotation | homologous HL_8GLP_028 HL_34789.6 | |
| HL_11HV_023 | 1/28/1886:1893 | No text annotation | homologous HL_9AXU_024 HL_47171.3 | |
| HL_11HV_026 | 1/28/2317:2322 | No text annotation | homologous HL_8GLP_032 HL_34789.6 | |
| HL_11HV_027 | 1/28/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.7 | |
| HL_11HV_028 | 1/28/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.2 | |
| HL_11HV_029 | 1/28/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.6 | |
| HL_11HV_031 | 1/28/2523:2532 | No text annotation | homologous HL_8GLP_038 HL_77449.3 | |
| HL_11HV_033 | 1/28/2578:2583 | No text annotation | homologous HL_8GLP_040 HL_34789.6 | |
| HL_11HV_034 | 1/28/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.3 | |
| HL_11HV_035 | 1/28/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_67772.3 | |
| HL_11HV_037 | 1/28/2738:2742 | No text annotation | homologous HL_8GLP_044 HL_90436.5 | |
| HL_11HV_038 | 1/28/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.4 | |
| HL_11HV_039 | 1/28/2810:2816 | No text annotation | homologous HL_9AXU_039 HL_34789.6 | |
| HL_11HV_040 | 1/28/2872:2877 | No text annotation | homologous HL_8GLP_047 HL_61337.6 | |
| HL_11HV_041 | 1/28/3614:3618 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_11HV_042 | 1/28/3639:3649 | No text annotation | homologous HL_9H3G_049 HL_87681.3 | |
| HL_11HV_043 | 1/28/3668:3674 | No text annotation | homologous HL_8GLP_051 HL_34789.6 | |
| HL_11HV_044 | 1/28/3724:3729 | No text annotation | homologous HL_9PN5_046 HL_34789.6 | |
| HL_11HV_045 | 1/28/3796:3804 | No text annotation | homologous HL_9H3G_053 HL_77449.3 | |
| HL_11HV_046 | 1/28/3873:3882 | No text annotation | homologous HL_9H3G_054 HL_78372.3 | |
| HL_11HV_047 | 1/28/4193:4201 | LSU P loop | homologous HL_8GLP_059 HL_11974.4 | |
| HL_11HV_048 | 1/28/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.3 | |
| HL_11HV_049 | 1/28/4250:4258 | No text annotation | homologous HL_8GLP_061 HL_02452.3 | |
| HL_11HV_050 | 1/28/4270:4277 | No text annotation | homologous HL_8GLP_062 HL_52651.4 | |
| HL_11HV_051 | 1/28/4301:4309 | No text annotation | homologous HL_8GLP_063 HL_15296.3 | |
| HL_11HV_052 | 1/28/4321:4326 | No text annotation | homologous HL_9AXU_055 HL_34789.6 | |
| HL_11HV_053 | 1/28/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_11HV_054 | 1/28/4417:4425 | No text annotation | homologous HL_9H3G_062 HL_52011.3 | |
| HL_11HV_055 | 1/28/4474:4481 | No text annotation | homologous HL_9H3G_063 HL_02262.1 | |
| HL_11HV_056 | 1/28/4497:4503 | No text annotation | homologous HL_9PN5_061 HL_02262.1 | |
| HL_11HV_057 | 1/28/4540:4545 | No text annotation | homologous HL_8GLP_069 HL_34789.6 | |
| HL_11HV_058 | 1/28/4603:4608 | No text annotation | homologous HL_8GLP_070 HL_34789.6 | |
| HL_11HV_059 | 1/28/4646:4651 | No text annotation | homologous HL_8GLP_071 HL_12125.4 | |
| HL_11HV_060 | 1/28/4688:4702 | No text annotation | homologous HL_9H3G_068 HL_53269.4 | |
| HL_11HV_061 | 1/28/4906:4915 | No text annotation | ||
| HL_11HV_062 | 1/28/4975:4983 | No text annotation | homologous HL_8GLP_075 HL_37889.3 | |
| HL_11HV_063 | 1/5/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.2 | |
| HL_11HV_064 | 1/5/36:41 | No text annotation | homologous HL_9AXU_069 HL_59381.4 | |
| HL_11HV_065 | 1/5/86:91 | No text annotation | homologous HL_8QYX_073 HL_34789.6 | |
| HL_11HV_066 | 1/58/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.3 | |
| HL_11HV_067 | 1/58/107:112 | No text annotation | homologous HL_8GLP_080 HL_23875.1 | |
| HL_11HV_068 | 1/58/121:129 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_11HV_016 | No text annotation | ||
| HL_11HV_020 | No text annotation | ||
| HL_11HV_024 | No text annotation | ||
| HL_11HV_025 | No text annotation | ||
| HL_11HV_030 | No text annotation | ||
| HL_11HV_032 | No text annotation | ||
| HL_11HV_036 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_11HV_001 | 1/28/6:7, 1/58/149:151 | Single bulged C | homologous IL_8GLP_001 IL_05642.5 | |
| IL_11HV_002 | 1/28/12:14, 1/58/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.7 | |
| IL_11HV_003 | 1/28/16:18, 1/58/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_01003.6 | |
| IL_11HV_004 | 1/28/26:27, 1/28/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.5 | |
| IL_11HV_005 | 1/28/30:37, 1/28/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.3 | |
| IL_11HV_006 | 1/28/81:88, 1/28/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.5 | |
| IL_11HV_007 | 1/28/118:121, 1/28/152:153 | No text annotation | geometric IL_8GLP_007 IL_36175.2 | |
| IL_11HV_008 | 1/28/118:122, 1/28/147:153 | Kink-turn with embedded cWW pair | geometric IL_8GLP_287 IL_65996.1 | |
| IL_11HV_009 | 1/28/121:122, 1/28/147:152 | No text annotation | homologous IL_9AXU_006 IL_10396.3 | |
| IL_11HV_010 | 1/28/125:126, 1/28/142:144 | Single bulged C | homologous IL_8GLP_009 IL_05642.5 | |
| IL_11HV_011 | 1/28/168:173, 1/28/263:267 | No text annotation | ||
| IL_11HV_012 | 1/28/195:196, 1/28/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.5 | |
| IL_11HV_013 | 1/28/199:201, 1/28/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.7 | |
| IL_11HV_014 | 1/28/339:342, 1/58/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_41261.1 | |
| IL_11HV_015 | 1/28/348:350, 1/58/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.4 | |
| IL_11HV_016 | 1/28/387:390, 1/28/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.3 | |
| IL_11HV_017 | 1/28/415:421, 1/58/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.3 | |
| IL_11HV_018 | 1/28/443:446, 1/28/1300:1304 | No text annotation | ||
| IL_11HV_019 | 1/28/448:450, 1/28/1297:1298 | No text annotation | ||
| IL_11HV_020 | 1/28/459:460, 1/28/695:697 | Single bulged C | homologous IL_8GLP_024 IL_05642.5 | |
| IL_11HV_021 | 1/28/461:464, 1/28/691:694 | Tandem non-canonical cWW pairs with external base triple | geometric IL_9H3G_114 IL_15225.4 | |
| IL_11HV_022 | 1/28/466:472, 1/28/682:689 | No text annotation | ||
| IL_11HV_023 | 1/28/481:482, 1/28/672:673 | Single bulged C | geometric IL_7KGA_004 IL_05642.5 | |
| IL_11HV_024 | 1/28/482:485, 1/28/671:672 | No text annotation | ||
| IL_11HV_025 | 1/28/487:488, 1/28/665:669 | Multiple bulged bases | geometric IL_1R3E_001 IL_09092.1 | |
| IL_11HV_026 | 1/28/491:493, 1/28/661:662 | Single bulged U | geometric IL_4WF9_030 IL_97561.7 | |
| IL_11HV_028 | 1/28/508:510, 1/28/649:650 | Single bulged A | homologous IL_8GLP_032 IL_14190.4 | |
| IL_11HV_030 | 1/28/709:710, 1/28/1286:1288 | Single bulged G | geometric IL_8GLP_034 IL_28408.4 | |
| IL_11HV_031 | 1/28/723:724, 1/28/942:945 | No text annotation | geometric IL_8GLP_035 IL_09092.1 | |
| IL_11HV_032 | 1/28/727:731, 1/28/938:939 | No text annotation | geometric IL_8GLP_036 IL_75501.2 | |
| IL_11HV_033 | 1/28/732:735, 1/28/928:937 | No text annotation | ||
| IL_11HV_034 | 1/28/737:739, 1/28/923:926 | No text annotation | geometric IL_8B0X_156 IL_44609.4 | |
| IL_11HV_035 | 1/28/745:752, 1/28/911:919 | No text annotation | geometric IL_8GLP_040 IL_25001.2 | |
| IL_11HV_036 | 1/28/1082:1084, 1/28/1213:1217 | No text annotation | geometric IL_8GLP_043 IL_84227.1 | |
| IL_11HV_037 | 1/28/1086:1087, 1/28/1209:1211 | Single bulged C | geometric IL_8GLP_044 IL_05642.5 | |
| IL_11HV_039 | 1/28/1173:1175, 1/28/1186:1188 | Isolated cWH basepair | geometric IL_8GLP_047 IL_10892.4 | |
| IL_11HV_040 | 1/28/1357:1360, 1/28/1379:1382 | No text annotation | ||
| IL_11HV_041 | 1/28/1357:1361, 1/28/1376:1382 | No text annotation | ||
| IL_11HV_042 | 1/28/1360:1361, 1/28/1376:1379 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_11HV_043 | 1/28/1425:1429, 1/28/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_11HV_044 | 1/28/1431:1434, 1/28/1450:1453 | Double sheared | homologous IL_8GLP_052 IL_58355.4 | |
| IL_11HV_045 | 1/28/1467:1468, 1/28/1496:1498 | Single bulged A | homologous IL_8GLP_053 IL_14190.4 | |
| IL_11HV_046 | 1/28/1474:1476, 1/28/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.5 | |
| IL_11HV_047 | 1/28/1520:1522, 1/28/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8GLP_289 IL_01003.6 | |
| IL_11HV_048 | 1/28/1522:1526, 1/28/1648:1655 | No text annotation | homologous IL_8GLP_290 IL_73855.3 | |
| IL_11HV_049 | 1/28/1550:1551, 1/28/1576:1578 | Single bulged G | homologous IL_8GLP_058 IL_28408.4 | |
| IL_11HV_050 | 1/28/1551:1555, 1/28/1572:1576 | No text annotation | homologous IL_8GLP_059 IL_15190.4 | |
| IL_11HV_051 | 1/28/1586:1589, 1/28/1605:1607 | No text annotation | homologous IL_8GLP_060 IL_36931.4 | |
| IL_11HV_052 | 1/28/1590:1592, 1/28/1603:1604 | Single bulged U | homologous IL_8GLP_061 IL_97561.7 | |
| IL_11HV_053 | 1/28/1624:1626, 1/28/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.3 | |
| IL_11HV_054 | 1/28/1671:1673, 1/28/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9AXU_033 IL_71625.5 | |
| IL_11HV_055 | 1/28/1686:1688, 1/28/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_11HV_056 | 1/28/1723:1725, 1/28/1838:1839 | Single bulged G | homologous IL_8GLP_066 IL_28408.4 | |
| IL_11HV_057 | 1/28/1732:1737, 1/28/1792:1797 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_11HV_058 | 1/28/1737:1738, 1/28/1790:1792 | Minor groove platform | homologous IL_9PN5_038 IL_41261.1 | |
| IL_11HV_059 | 1/28/1739:1744, 1/28/1786:1789 | No text annotation | homologous IL_9H3G_046 IL_16301.3 | |
| IL_11HV_060 | 1/28/1746:1749, 1/28/1781:1784 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.4 | |
| IL_11HV_061 | 1/28/1749:1751, 1/28/1779:1781 | Isolated non-canonical cWW pair | homologous IL_9H3G_048 IL_01003.6 | |
| IL_11HV_062 | 1/28/1753:1756, 1/28/1776:1777 | Major groove platform | geometric IL_8DP3_001 IL_15011.5 | |
| IL_11HV_064 | 1/28/1814:1816, 1/28/1823:1824 | Single bulged G | homologous IL_8GLP_072 IL_28408.4 | |
| IL_11HV_065 | 1/28/1858:1860, 1/28/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.6 | |
| IL_11HV_067 | 1/28/1905:1909, 1/28/2067:2071 | UAA/GAN | homologous IL_8GLP_075 IL_08938.3 | |
| IL_11HV_068 | 1/28/1911:1918, 1/28/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.3 | |
| IL_11HV_069 | 1/28/1918:1920, 1/28/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.4 | |
| IL_11HV_070 | 1/28/1920:1922, 1/28/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.5 | |
| IL_11HV_071 | 1/28/1926:1933, 1/28/2053:2058 | No text annotation | homologous IL_8GLP_079 IL_39054.3 | |
| IL_11HV_072 | 1/28/1933:1944, 1/28/2038:2053 | No text annotation | homologous IL_8GLP_080 IL_34501.3 | |
| IL_11HV_073 | 1/28/1946:1948, 1/28/2035:2036 | Single bulged U | homologous IL_8GLP_081 IL_97561.7 | |
| IL_11HV_074 | 1/28/1957:1965, 1/28/2022:2026 | Kink-turn | homologous IL_8GLP_082 IL_99692.4 | |
| IL_11HV_077 | 1/28/2083:2085, 1/28/2272:2273 | Single bulged C | homologous IL_8GLP_083 IL_05642.5 | |
| IL_11HV_078 | 1/28/2290:2292, 1/28/2342:2345 | No text annotation | homologous IL_8GLP_084 IL_84227.1 | |
| IL_11HV_079 | 1/28/2299:2301, 1/28/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.4 | |
| IL_11HV_080 | 1/28/2302:2309, 1/28/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.3 | |
| IL_11HV_081 | 1/28/2312:2314, 1/28/2325:2326 | Single bulged A | homologous IL_8GLP_087 IL_14190.4 | |
| IL_11HV_082 | 1/28/2358:2364, 1/28/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.3 | |
| IL_11HV_083 | 1/28/2415:2419, 1/28/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.3 | |
| IL_11HV_084 | 1/28/2446:2450, 1/28/2509:2514 | UAA/GAN | homologous IL_8GLP_091 IL_08938.3 | |
| IL_11HV_085 | 1/28/2477:2479, 1/28/2499:2500 | Minor groove platform | homologous IL_8GLP_092 IL_41261.1 | |
| IL_11HV_086 | 1/28/2542:2547, 1/28/2772:2774 | No text annotation | homologous IL_9AXU_061 IL_75527.4 | |
| IL_11HV_087 | 1/28/2549:2550, 1/28/2768:2770 | Single bulged U | homologous IL_8GLP_095 IL_97561.7 | |
| IL_11HV_088 | 1/28/2589:2593, 1/28/2752:2756 | No text annotation | homologous IL_8GLP_096 IL_15190.4 | |
| IL_11HV_089 | 1/28/2613:2614, 1/28/2724:2726 | Single bulged A | homologous IL_8GLP_097 IL_14190.4 | |
| IL_11HV_090 | 1/28/2614:2615, 1/28/2722:2724 | Single stack bend | homologous IL_8GLP_098 IL_15011.5 | |
| IL_11HV_091 | 1/28/2646:2648, 1/28/2685:2688 | No text annotation | homologous IL_8GLP_099 IL_87316.4 | |
| IL_11HV_092 | 1/28/2651:2653, 1/28/2681:2682 | Single bulged G | homologous IL_8GLP_100 IL_28408.4 | |
| IL_11HV_093 | 1/28/2656:2662, 1/28/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.3 | |
| IL_11HV_095 | 1/28/2832:2838, 1/28/3850:3853 | No text annotation | homologous IL_9H3G_083 IL_89862.3 | |
| IL_11HV_096 | 1/28/2844:2846, 1/28/3842:3844 | No text annotation | homologous IL_9H3G_084 IL_10432.3 | |
| IL_11HV_097 | 1/28/2847:2850, 1/28/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8OI5_078 IL_74641.4 | |
| IL_11HV_098 | 1/28/2847:2855, 1/28/3837:3841 | No text annotation | geometric IL_8GLP_305 IL_80252.3 | |
| IL_11HV_099 | 1/28/2850:2855, 1/28/3837:3840 | No text annotation | homologous IL_8GLP_107 IL_28217.3 | |
| IL_11HV_100 | 1/28/2867:2872, 1/28/2877:2883 | No text annotation | homologous IL_8GLP_108 IL_20700.3 | |
| IL_11HV_101 | 1/28/2889:2891, 1/28/3610:3612 | Isolated non-canonical cWW pair | homologous IL_9PN5_078 IL_01003.6 | |
| IL_11HV_102 | 1/28/2896:2897, 1/28/3602:3605 | No text annotation | homologous IL_8GLP_110 IL_18824.3 | |
| IL_11HV_103 | 1/28/3632:3633, 1/28/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.4 | |
| IL_11HV_104 | 1/28/3660:3665, 1/28/3677:3684 | No text annotation | homologous IL_8GLP_114 IL_14684.3 | |
| IL_11HV_105 | 1/28/3700:3703, 1/28/3749:3750 | No text annotation | homologous IL_9PN5_082 IL_55206.3 | |
| IL_11HV_106 | 1/28/3704:3705, 1/28/3745:3748 | No text annotation | homologous IL_8GLP_117 IL_71421.5 | |
| IL_11HV_107 | 1/28/3708:3714, 1/28/3739:3742 | No text annotation | ||
| IL_11HV_108 | 1/28/3714:3721, 1/28/3732:3739 | No text annotation | homologous IL_8GLP_121 NA | |
| IL_11HV_109 | 1/28/3780:3781, 1/28/3811:3814 | No text annotation | geometric IL_9AXU_083 IL_24886.4 | |
| IL_11HV_110 | 1/28/3781:3792, 1/28/3808:3811 | No text annotation | homologous IL_8GLP_307 IL_84014.3 | |
| IL_11HV_111 | 1/28/3895:3898, 1/28/4563:4565 | No text annotation | homologous IL_8GLP_127 IL_75527.4 | |
| IL_11HV_112 | 1/28/3900:3902, 1/28/4558:4561 | No text annotation | homologous IL_8GLP_129 IL_80025.3 | |
| IL_11HV_113 | 1/28/3913:3915, 1/28/4388:4389 | Single bulged U | homologous IL_8GLP_130 IL_97561.7 | |
| IL_11HV_114 | 1/28/3916:3917, 1/28/4384:4387 | Minor groove platform | homologous IL_8GLP_131 IL_98469.1 | |
| IL_11HV_115 | 1/28/3927:3929, 1/28/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.4 | |
| IL_11HV_116 | 1/28/4082:4088, 1/28/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.3 | |
| IL_11HV_118 | 1/28/4191:4192, 1/28/4202:4204 | AG tHS outside loop | homologous IL_8GLP_137 IL_14190.4 | |
| IL_11HV_119 | 1/28/4243:4245, 1/28/4263:4267 | No text annotation | homologous IL_8GLP_138 IL_14250.3 | |
| IL_11HV_120 | 1/28/4291:4293, 1/28/4317:4318 | Single bulged A | geometric IL_9AXU_093 IL_14190.4 | |
| IL_11HV_121 | 1/28/4295:4298, 1/28/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.4 | |
| IL_11HV_122 | 1/28/4347:4350, 1/28/4364:4365 | No text annotation | homologous IL_9H3G_115 IL_57267.1 | |
| IL_11HV_123 | 1/28/4400:4401, 1/28/4442:4444 | Major groove platform | homologous IL_9H3G_116 IL_48076.10 | |
| IL_11HV_124 | 1/28/4401:4403, 1/28/4440:4442 | Isolated non-canonical cWW pair | homologous IL_9H3G_117 IL_01003.6 | |
| IL_11HV_125 | 1/28/4403:4405, 1/28/4439:4440 | No text annotation | homologous IL_9H3G_118 IL_46637.4 | |
| IL_11HV_126 | 1/28/4405:4407, 1/28/4435:4439 | No text annotation | homologous IL_9H3G_119 IL_36931.4 | |
| IL_11HV_127 | 1/28/4412:4416, 1/28/4426:4430 | No text annotation | homologous IL_9PN5_101 IL_87767.4 | |
| IL_11HV_128 | 1/28/4453:4454, 1/28/4526:4528 | No text annotation | homologous IL_8GLP_146 IL_46637.4 | |
| IL_11HV_129 | 1/28/4456:4458, 1/28/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.1 | |
| IL_11HV_130 | 1/28/4458:4459, 1/28/4517:4520 | No text annotation | homologous IL_8GLP_148 IL_44609.4 | |
| IL_11HV_131 | 1/28/4466:4468, 1/28/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8OI5_110 IL_01003.6 | |
| IL_11HV_132 | 1/28/4466:4470, 1/28/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_11HV_133 | 1/28/4468:4470, 1/28/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_11HV_134 | 1/28/4495:4497, 1/28/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.6 | |
| IL_11HV_135 | 1/28/4537:4538, 1/28/4547:4549 | Single bulged A | homologous IL_8GLP_154 IL_14190.4 | |
| IL_11HV_136 | 1/28/4580:4582, 1/28/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.4 | |
| IL_11HV_137 | 1/28/4582:4585, 1/28/4717:4721 | Double sheared | homologous IL_9AXU_107 IL_58355.4 | |
| IL_11HV_138 | 1/28/4590:4592, 1/28/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.5 | |
| IL_11HV_139 | 1/28/4596:4603, 1/28/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.1 | |
| IL_11HV_140 | 1/28/4624:4629, 1/28/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.1 | |
| IL_11HV_141 | 1/28/4632:4637, 1/28/4662:4666 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_11HV_142 | 1/28/4638:4640, 1/28/4659:4661 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.4 | |
| IL_11HV_143 | 1/28/4641:4642, 1/28/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.4 | |
| IL_11HV_144 | 1/28/4680:4685, 1/28/4705:4710 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_11HV_145 | 1/28/4756:4766, 1/28/4868:4877 | No text annotation | ||
| IL_11HV_146 | 1/28/4769:4771, 1/28/4863:4865 | Isolated non-canonical cWW pair | homologous IL_8GLP_169 IL_71625.5 | |
| IL_11HV_148 | 1/28/4885:4888, 1/28/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_71194.4 | |
| IL_11HV_149 | 1/28/4890:4896, 1/28/4924:4929 | No text annotation | ||
| IL_11HV_150 | 1/28/4972:4975, 1/28/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9AXU_117 IL_71194.4 | |
| IL_11HV_151 | 1/28/4992:4994, 1/28/5057:5059 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.6 | |
| IL_11HV_152 | 1/28/4996:4997, 1/28/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.5 | |
| IL_11HV_153 | 1/28/5000:5002, 1/28/5045:5050 | No text annotation | homologous IL_9H3G_143 IL_00086.3 | |
| IL_11HV_154 | 1/28/5003:5009, 1/28/5039:5044 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_11HV_155 | 1/28/5012:5014, 1/28/5035:5036 | Single bulged C | homologous IL_8GLP_178 IL_05642.5 | |
| IL_11HV_156 | 1/28/5014:5017, 1/28/5032:5035 | Double sheared; A in syn | geometric IL_8OI5_132 IL_58355.4 | |
| IL_11HV_157 | 1/5/15:16, 1/5/62:64 | Single bulged C | homologous IL_8QYX_165 IL_05642.5 | |
| IL_11HV_158 | 1/5/21:27, 1/5/52:57 | No text annotation | homologous IL_8QYX_166 IL_41504.2 | |
| IL_11HV_159 | 1/5/28:29, 1/5/48:51 | No text annotation | homologous IL_8QYX_167 IL_73108.4 | |
| IL_11HV_160 | 1/5/32:36, 1/5/41:45 | Symmetric double minor groove platform | homologous IL_8QYX_168 IL_58103.14 | |
| IL_11HV_161 | 1/5/71:78, 1/5/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8QYX_169 IL_62879.1 | |
| IL_11HV_162 | 1/5/79:81, 1/5/95:97 | No text annotation | homologous IL_8QYX_170 IL_01334.1 | |
| IL_11HV_163 | 1/5/82:85, 1/5/92:94 | Isolated non-canonical cWW pair | homologous IL_8QYX_171 IL_01003.6 | |
| IL_11HV_164 | 1/58/64:66, 1/58/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_11HV_027 | No text annotation | ||
| IL_11HV_029 | Single stack bend | ||
| IL_11HV_038 | Single stack bend | ||
| IL_11HV_063 | No text annotation | ||
| IL_11HV_066 | No text annotation | ||
| IL_11HV_075 | No text annotation | ||
| IL_11HV_076 | No text annotation | ||
| IL_11HV_094 | Single bulged G | ||
| IL_11HV_117 | Single stack bend | ||
| IL_11HV_147 | Single bulged C | ||
| IL_11HV_165 | Isolated non-canonical cWW pair | ||
| IL_11HV_166 | No text annotation | ||
| IL_11HV_167 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_11HV_001 | 1/28/112:116, 1/28/155:160, 1/28/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_11HV_002 | 1/28/196:199, 1/28/215:228, 1/28/240:244 | No text annotation | ||
| J3_11HV_003 | 1/28/351:367, 1/28/374:379, 1/58/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.3 | |
| J3_11HV_004 | 1/28/380:387, 1/28/414:415, 1/58/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.3 | |
| J3_11HV_005 | 1/28/380:390, 1/28/401:415, 1/58/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.3 | |
| J3_11HV_006 | 1/28/451:455, 1/28/701:705, 1/28/1292:1296 | No text annotation | homologous J3_8GLP_027 NA | |
| J3_11HV_007 | 1/28/1531:1537, 1/28/1622:1624, 1/28/1640:1643 | No text annotation | homologous J3_9AXU_009 J3_46658.3 | |
| J3_11HV_008 | 1/28/1545:1548, 1/28/1580:1584, 1/28/1609:1614 | No text annotation | ||
| J3_11HV_009 | 1/28/1726:1727, 1/28/1802:1806, 1/28/1832:1837 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_11HV_010 | 1/28/1969:1971, 1/28/1995:2001, 1/28/2016:2018 | No text annotation | geometric J3_5D8H_001 J3_37832.2 | |
| J3_11HV_011 | 1/28/2393:2399, 1/28/2805:2807, 1/28/2819:2822 | No text annotation | homologous J3_8GLP_004 J3_05025.3 | |
| J3_11HV_012 | 1/28/2402:2405, 1/28/2785:2791, 1/28/2800:2802 | No text annotation | homologous J3_9AXU_014 J3_76012.3 | |
| J3_11HV_013 | 1/28/2440:2445, 1/28/2515:2519, 1/28/2536:2537 | No text annotation | homologous J3_8GLP_030 J3_94309.3 | |
| J3_11HV_014 | 1/28/2451:2456, 1/28/2465:2476, 1/28/2501:2508 | No text annotation | ||
| J3_11HV_015 | 1/28/2551:2555, 1/28/2572:2575, 1/28/2757:2767 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_11HV_016 | 1/28/2575:2576, 1/28/2585:2589, 1/28/2756:2757 | No text annotation | homologous J3_8GLP_032 J3_05348.3 | |
| J3_11HV_017 | 1/28/2598:2602, 1/28/2737:2738, 1/28/2742:2747 | No text annotation | homologous J3_9H3G_020 J3_08594.3 | |
| J3_11HV_018 | 1/28/3937:3939, 1/28/4074:4078, 1/28/4168:4173 | No text annotation | ||
| J3_11HV_019 | 1/28/4091:4094, 1/28/4114:4129, 1/28/4155:4158 | No text annotation | homologous J3_9PN5_019 J3_60469.1 | |
| J3_11HV_020 | 1/28/4228:4230, 1/28/4331:4342, 1/28/4370:4375 | No text annotation | homologous J3_8GLP_034 J3_04772.3 | |
| J3_11HV_021 | 1/28/4241:4243, 1/28/4267:4269, 1/28/4278:4283 | No text annotation | homologous J3_9AXU_022 J3_05327.3 | |
| J3_11HV_022 | 1/28/4463:4466, 1/28/4491:4493, 1/28/4507:4513 | No text annotation | homologous J3_9H3G_024 J3_44047.3 | |
| J3_11HV_023 | 1/28/4749:4754, 1/28/4879:4883, 1/28/4936:4951 | No text annotation | ||
| J3_11HV_024 | 1/28/4970:4972, 1/28/4986:4991, 1/28/5060:5063 | No text annotation | homologous J3_8GLP_037 NA | |
| J3_11HV_025 | 1/5/9:14, 1/5/65:66, 1/5/109:110 | No text annotation | homologous J3_8QYX_024 J3_26985.3 | |
| J3_11HV_026 | 1/58/44:45, 1/58/58:64, 1/58/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.3 | |
| J4_11HV_001 | 1/28/111:112, 1/28/278:283, 1/28/304:310, 1/28/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.3 | |
| J4_11HV_002 | 1/28/196:199, 1/28/215:222, 1/28/226:228, 1/28/240:244 | No text annotation | ||
| J4_11HV_003 | 1/28/2365:2371, 1/28/2389:2391, 1/28/2824:2829, 1/28/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_11HV_004 | 1/28/2406:2410, 1/28/2434:2439, 1/28/2538:2539, 1/28/2777:2784 | No text annotation | homologous J4_9PN5_004 J4_17758.1 | |
| J4_11HV_005 | 1/28/2618:2619, 1/28/2637:2642, 1/28/2692:2698, 1/28/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_11HV_006 | 1/28/3634:3638, 1/28/3650:3654, 1/28/3690:3694, 1/28/3821:3826 | No text annotation | homologous J4_9AXU_007 J4_78485.3 | |
| J4_11HV_007 | 1/28/3696:3698, 1/28/3752:3753, 1/28/3771:3780, 1/28/3814:3819 | No text annotation | homologous J4_9H3G_008 J4_42306.3 | |
| J4_11HV_008 | 1/28/4231:4235, 1/28/4289:4291, 1/28/4318:4319, 1/28/4328:4330 | No text annotation | ||
| J4_11HV_009 | 1/28/4231:4235, 1/28/4289:4293, 1/28/4317:4319, 1/28/4328:4330 | No text annotation | homologous J4_8GLP_012 J4_59590.3 | |
| J4_11HV_010 | 1/28/4587:4590, 1/28/4620:4621, 1/28/4676:4678, 1/28/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J5_11HV_001 | 1/28/19:21, 1/58/35:42, 1/58/101:106, 1/58/113:114, 1/58/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.3 | |
| J5_11HV_002 | 1/28/1335:1340, 1/28/1516:1519, 1/28/1658:1661, 1/28/2288:2290, 1/28/2345:2351 | No text annotation | homologous J5_8GLP_002 J5_08384.3 | |
| J5_11HV_003 | 1/28/2855:2863, 1/28/2887:2888, 1/28/3613:3614, 1/28/3618:3626, 1/28/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.3 | |
| J5_11HV_004 | 1/28/3903:3910, 1/28/4392:4400, 1/28/4444:4453, 1/28/4528:4534, 1/28/4552:4557 | No text annotation | ||
| J5_11HV_005 | 1/28/3920:3923, 1/28/4188:4191, 1/28/4204:4205, 1/28/4227:4228, 1/28/4375:4381 | No text annotation | homologous J5_9H3G_006 J5_96125.3 | |
| J6_11HV_001 | 1/28/21:26, 1/28/57:67, 1/28/74:78, 1/28/105:109, 1/28/332:339, 1/58/33:35 | No text annotation | ||
| J6_11HV_002 | 1/28/1352:1355, 1/28/1384:1388, 1/28/1395:1399, 1/28/1418:1421, 1/28/1464:1466, 1/28/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_11HV_003 | 1/28/3920:3923, 1/28/4188:4191, 1/28/4204:4205, 1/28/4227:4230, 1/28/4331:4342, 1/28/4370:4381 | No text annotation | ||
| J7_11HV_001 | 1/28/1666:1671, 1/28/1684:1685, 1/28/1852:1855, 1/28/1879:1884, 1/28/1895:1899, 1/28/2077:2078, 1/28/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_11HV_027 | No text annotation |
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