HL_11HV_042

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

11HV|1|28|A|3642, 11HV|1|28|A|3643, 11HV|1|28|U|3644, 11HV|1|28|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_042 not in the Motif Atlas

Homologous match to HL_9H3G_049

Geometric discrepancy: 0.0674

The information below is about HL_9H3G_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

11HV|1|28|U|3639
11HV|1|28|U|3640
11HV|1|28|U|3641
11HV|1|28|A|3642
11HV|1|28|A|3643
11HV|1|28|U|3644
11HV|1|28|U|3645
11HV|1|28|A|3646
11HV|1|28|A|3647
11HV|1|28|A|3648
11HV|1|28|A|3649

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 37

60S ribosomal protein L37

Chain L8

60S ribosomal protein L8