HL_11HV_050

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_050 not in the Motif Atlas

Homologous match to HL_8GLP_062

Geometric discrepancy: 0.0675

The information below is about HL_8GLP_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

11HV|1|28|C|4270
11HV|1|28|A|4271
11HV|1|28|G|4272
11HV|1|28|A|4273
11HV|1|28|A|4274
11HV|1|28|G|4275
11HV|1|28|G|4276
11HV|1|28|G|4277

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 21

60S ribosomal protein L21

Chain 42

eL42