HL_11HV_055

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

11HV|1|28|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_055 not in the Motif Atlas

Homologous match to HL_9H3G_063

Geometric discrepancy: 0.1038

The information below is about HL_9H3G_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

11HV|1|28|A|4474
11HV|1|28|G|4475
11HV|1|28|C|4476
11HV|1|28|A|4477
11HV|1|28|G|4478
11HV|1|28|A|4479
11HV|1|28|A|4480
11HV|1|28|U|4481

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain v

Elongation factor 2