HL_11HV_060

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

11HV|1|28|G|4694, 11HV|1|28|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_060 not in the Motif Atlas

Homologous match to HL_9H3G_068

Geometric discrepancy: 0.0637

The information below is about HL_9H3G_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

11HV|1|28|C|4688
11HV|1|28|U|4689
11HV|1|28|G|4690
11HV|1|28|A|4691
11HV|1|28|A|4692
11HV|1|28|C|4693
11HV|1|28|G|4694
11HV|1|28|C|4695
11HV|1|28|C|4696
11HV|1|28|U|4697
11HV|1|28|C|4698
11HV|1|28|U|4699
11HV|1|28|A|4700
11HV|1|28|A|4701
11HV|1|28|G|4702

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13