HL_11HV_062

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

11HV|1|28|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_062 not in the Motif Atlas

Homologous match to HL_8GLP_075

Geometric discrepancy: 0.0599

The information below is about HL_8GLP_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

11HV|1|28|G|4975
11HV|1|28|U|4976
11HV|1|28|A|4977
11HV|1|28|G|4978
11HV|1|28|A|4979
11HV|1|28|C|4980
11HV|1|28|G|4981
11HV|1|28|A|4982
11HV|1|28|C|4983

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3