HL_11HV_067

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

11HV|1|58|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_067 not in the Motif Atlas

Homologous match to HL_8GLP_080

Geometric discrepancy: 0.156

The information below is about HL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

11HV|1|58|C|107
11HV|1|58|A|108
11HV|1|58|C|109
11HV|1|58|U|110
11HV|1|58|U|111
11HV|1|58|G|112

Current chains

Chain 58

5.8S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 37

60S ribosomal protein L37

Chain 39

60S ribosomal protein L39

Chain cc

Large ribosomal subunit protein uL23