HL_11IQ_004

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_004 not in the Motif Atlas

Geometric match to HL_9E6Q_061

Geometric discrepancy: 0.2203

The information below is about HL_9E6Q_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11IQ|1|18|U|197
11IQ|1|18|U|198
11IQ|1|18|C|199
11IQ|1|18|G|200
11IQ|1|18|C|201
11IQ|1|18|G|202

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S8

40S ribosomal protein S8