HL_11IQ_007

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_007 not in the Motif Atlas

Homologous match to HL_9H3G_085

Geometric discrepancy: 0.3438

The information below is about HL_9H3G_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11IQ|1|18|U|416
11IQ|1|18|C|417
11IQ|1|18|A|418
11IQ|1|18|G|419
11IQ|1|18|G|420
11IQ|1|18|G|421

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain QQ

40S ribosomal protein S15a

Chain RR

40S ribosomal protein S23

Chain S2

40S ribosomal protein S2

Chain S9

40S ribosomal protein S9