HL_11IQ_010

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

11IQ|1|18|A|500, 11IQ|1|18|C|502, 11IQ|1|18|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_010 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1888

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

11IQ|1|18|C|498
11IQ|1|18|G|499
11IQ|1|18|A|500
11IQ|1|18|C|501
11IQ|1|18|C|502
11IQ|1|18|C|503
11IQ|1|18|G|504

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain SS

40S ribosomal protein S24