HL_11IQ_011

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

11IQ|1|18|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_011 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.2605

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

11IQ|1|18|C|539
11IQ|1|18|U|540
11IQ|1|18|U|541
11IQ|1|18|U|542
11IQ|1|18|C|543
11IQ|1|18|G|544

Current chains

Chain 18

18S rRNA

Nearby chains