HL_11IQ_017

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_017 not in the Motif Atlas

Homologous match to HL_9PN5_095

Geometric discrepancy: 0.1876

The information below is about HL_9PN5_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

11IQ|1|18|A|957
11IQ|1|18|G|958
11IQ|1|18|G|959
11IQ|1|18|U|960
11IQ|1|18|G|961
11IQ|1|18|A|962
11IQ|1|18|A|963
11IQ|1|18|A|964
11IQ|1|18|U|965
11IQ|1|18|U|966

Current chains

Chain 18

18S rRNA

Nearby chains

Chain GG

Small ribosomal subunit protein uS11