HL_11IQ_024

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

11IQ|1|18|U|1300, 11IQ|1|18|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_024 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.3823

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

11IQ|1|18|A|1295
11IQ|1|18|U|1296
11IQ|1|18|U|1297
11IQ|1|18|G|1298
11IQ|1|18|A|1299
11IQ|1|18|U|1300
11IQ|1|18|A|1301
11IQ|1|18|G|1302
11IQ|1|18|C|1303
11IQ|1|18|U|1304

Current chains

Chain 18

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS19

Chain XX

40S ribosomal protein S29

Chain ZZ

40S ribosomal protein S27a