HL_11IQ_028

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_028 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.3898

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.4

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

11IQ|1|18|C|1460
11IQ|1|18|G|1461
11IQ|1|18|U|1462
11IQ|1|18|U|1463
11IQ|1|18|C|1464
11IQ|1|18|A|1465
11IQ|1|18|G|1466

Current chains

Chain 18

18S rRNA

Nearby chains

Chain AA

Receptor of activated protein C kinase 1

Chain BB

40S_SA_C domain-containing protein

Chain JJ

40S ribosomal protein S17