HL_11IQ_049

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

11IQ|1|28|U|1596, 11IQ|1|28|A|1600, 11IQ|1|28|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_049 not in the Motif Atlas

Homologous match to HL_8GLP_023

Geometric discrepancy: 0.0576

The information below is about HL_8GLP_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

11IQ|1|28|A|1593
11IQ|1|28|C|1594
11IQ|1|28|G|1595
11IQ|1|28|U|1596
11IQ|1|28|G|1597
11IQ|1|28|C|1598
11IQ|1|28|G|1599
11IQ|1|28|A|1600
11IQ|1|28|A|1601
11IQ|1|28|U|1602

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

Large ribosomal subunit protein uL22

Chain 37

60S ribosomal protein L37

Chain L3

60S ribosomal protein L3