HL_11IQ_053

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

11IQ|1|28|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_053 not in the Motif Atlas

Homologous match to HL_8GLP_028

Geometric discrepancy: 0.0521

The information below is about HL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

11IQ|1|28|G|1864
11IQ|1|28|G|1865
11IQ|1|28|U|1866
11IQ|1|28|A|1867
11IQ|1|28|A|1868
11IQ|1|28|G|1869
11IQ|1|28|C|1870

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10