HL_11IQ_061

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

11IQ|1|28|C|2488, 11IQ|1|28|C|2489

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_061 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3401

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

11IQ|1|28|G|2487
11IQ|1|28|C|2488
11IQ|1|28|C|2489
11IQ|1|28|U|2490
11IQ|1|28|C|2491

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 58

5.8S ribosomal RNA; 5.8S rRNA