HL_11IQ_071

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

11IQ|1|28|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_071 not in the Motif Atlas

Homologous match to HL_9PN5_042

Geometric discrepancy: 0.0602

The information below is about HL_9PN5_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

11IQ|1|28|C|2872
11IQ|1|28|U|2873
11IQ|1|28|U|2874
11IQ|1|28|C|2875
11IQ|1|28|G|2876
11IQ|1|28|G|2877

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 41

eL41

Chain ff

60S ribosomal protein L37a