HL_11IQ_073

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

11IQ|1|28|A|3642, 11IQ|1|28|A|3643, 11IQ|1|28|U|3644, 11IQ|1|28|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_073 not in the Motif Atlas

Homologous match to HL_9H3G_049

Geometric discrepancy: 0.0719

The information below is about HL_9H3G_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

11IQ|1|28|U|3639
11IQ|1|28|U|3640
11IQ|1|28|U|3641
11IQ|1|28|A|3642
11IQ|1|28|A|3643
11IQ|1|28|U|3644
11IQ|1|28|U|3645
11IQ|1|28|A|3646
11IQ|1|28|A|3647
11IQ|1|28|A|3648
11IQ|1|28|A|3649

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 37

60S ribosomal protein L37

Chain L8

60S ribosomal protein L8