HL_11IQ_074

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

11IQ|1|28|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_074 not in the Motif Atlas

Homologous match to HL_8GLP_051

Geometric discrepancy: 0.251

The information below is about HL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11IQ|1|28|C|3668
11IQ|1|28|G|3669
11IQ|1|28|C|3670
11IQ|1|28|G|3671
11IQ|1|28|G|3672
11IQ|1|28|C|3673
11IQ|1|28|G|3674

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain L8

60S ribosomal protein L8

Chain aa

Large ribosomal subunit protein eL8