HL_11IQ_077

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

11IQ|1|28|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_077 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0632

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11IQ|1|28|U|3796
11IQ|1|28|C|3797
11IQ|1|28|U|3798
11IQ|1|28|A|3799
11IQ|1|28|A|3800
11IQ|1|28|U|3801
11IQ|1|28|U|3802
11IQ|1|28|A|3803
11IQ|1|28|G|3804

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 23

Large ribosomal subunit protein uL14