HL_11IQ_078

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

11IQ|1|28|A|3876, 11IQ|1|28|A|3877, 11IQ|1|28|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_078 not in the Motif Atlas

Homologous match to HL_8GLP_055

Geometric discrepancy: 0.0809

The information below is about HL_8GLP_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

11IQ|1|28|G|3873
11IQ|1|28|G|3874
11IQ|1|28|G|3875
11IQ|1|28|A|3876
11IQ|1|28|A|3877
11IQ|1|28|C|3878
11IQ|1|28|G|3879
11IQ|1|28|G|3880
11IQ|1|28|G|3881
11IQ|1|28|C|3882

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L3

60S ribosomal protein L3