HL_11IQ_083

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_083 not in the Motif Atlas

Homologous match to HL_8GLP_063

Geometric discrepancy: 0.1632

The information below is about HL_8GLP_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11IQ|1|28|U|4301
11IQ|1|28|U|4302
11IQ|1|28|C|4303
11IQ|1|28|A|4304
11IQ|1|28|G|4305
11IQ|1|28|U|4306
11IQ|1|28|A|4307
11IQ|1|28|C|4308
11IQ|1|28|G|4309

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 42

eL42

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a