HL_11JJ_001

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

11JJ|1|18|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_001 not in the Motif Atlas

Homologous match to HL_9H3G_079

Geometric discrepancy: 0.0973

The information below is about HL_9H3G_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.3

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

11JJ|1|18|G|7
11JJ|1|18|U|8
11JJ|1|18|U|9
11JJ|1|18|G|10
11JJ|1|18|A|11
11JJ|1|18|U|12
11JJ|1|18|C|13
11JJ|1|18|C|14
11JJ|1|18|U|15
11JJ|1|18|G|16
11JJ|1|18|C|17

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LA

LARP1

Chain RR

40S ribosomal protein S23

Chain S2

40S ribosomal protein S2