11JJ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_11JJ_001 | 1/18/7:17 | No text annotation | homologous HL_9H3G_079 HL_73535.3 | |
| HL_11JJ_005 | 1/18/288:295 | No text annotation | homologous HL_9PN5_082 HL_67772.3 | |
| HL_11JJ_006 | 1/18/377:387 | No text annotation | geometric HL_8GLP_091 HL_50525.1 | |
| HL_11JJ_008 | 1/18/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.3 | |
| HL_11JJ_009 | 1/18/462:467 | No text annotation | homologous HL_9H3G_087 HL_61337.6 | |
| HL_11JJ_010 | 1/18/498:504 | No text annotation | homologous HL_9PN5_088 HL_25795.1 | |
| HL_11JJ_012 | 1/18/563:592 | No text annotation | ||
| HL_11JJ_013 | 1/18/618:623 | No text annotation | homologous HL_9H3G_090 HL_34789.6 | |
| HL_11JJ_015 | 1/18/820:828 | No text annotation | homologous HL_9PN5_092 HL_11974.4 | |
| HL_11JJ_018 | 1/18/957:966 | No text annotation | homologous HL_9H3G_093 HL_38491.4 | |
| HL_11JJ_019 | 1/18/994:999 | No text annotation | homologous HL_9PN5_096 HL_34789.6 | |
| HL_11JJ_020 | 1/18/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.4 | |
| HL_11JJ_022 | 1/18/1141:1146 | No text annotation | homologous HL_9H3G_097 HL_34789.6 | |
| HL_11JJ_023 | 1/18/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.6 | |
| HL_11JJ_024 | 1/18/1245:1254 | No text annotation | homologous HL_9H3G_099 HL_97521.3 | |
| HL_11JJ_026 | 1/18/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.6 | |
| HL_11JJ_027 | 1/18/1366:1373 | No text annotation | homologous HL_9PN5_104 HL_63894.4 | |
| HL_11JJ_031 | 1/18/1614:1625 | No text annotation | homologous HL_9PN5_108 HL_50951.3 | |
| HL_11JJ_032 | 1/18/1658:1666 | No text annotation | homologous HL_9PN5_109 HL_25307.2 | |
| HL_11JJ_033 | 1/18/1847:1852 | No text annotation | homologous HL_9H3G_108 HL_34789.6 | |
| HL_11JJ_034 | 1/28/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.1 | |
| HL_11JJ_035 | 1/28/68:73 | No text annotation | homologous HL_9PN5_002 HL_23875.1 | |
| HL_11JJ_036 | 1/28/89:95 | No text annotation | homologous HL_8GLP_003 HL_76371.4 | |
| HL_11JJ_037 | 1/28/132:136 | No text annotation | ||
| HL_11JJ_038 | 1/28/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.5 | |
| HL_11JJ_039 | 1/28/222:226 | No text annotation | homologous HL_8GLP_006 HL_75660.10 | |
| HL_11JJ_040 | 1/28/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.6 | |
| HL_11JJ_041 | 1/28/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.4 | |
| HL_11JJ_042 | 1/28/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.4 | |
| HL_11JJ_043 | 1/28/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.6 | |
| HL_11JJ_044 | 1/28/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.6 | |
| HL_11JJ_045 | 1/28/961:971 | No text annotation | ||
| HL_11JJ_046 | 1/28/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.7 | |
| HL_11JJ_047 | 1/28/1389:1394 | No text annotation | homologous HL_8GLP_018 HL_34789.6 | |
| HL_11JJ_048 | 1/28/1479:1486 | No text annotation | ||
| HL_11JJ_049 | 1/28/1561:1566 | No text annotation | homologous HL_8GLP_022 HL_34789.6 | |
| HL_11JJ_050 | 1/28/1593:1602 | No text annotation | homologous HL_8GLP_023 HL_50204.3 | |
| HL_11JJ_051 | 1/28/1627:1635 | No text annotation | homologous HL_8GLP_024 HL_28253.1 | |
| HL_11JJ_052 | 1/28/1675:1680 | No text annotation | homologous HL_9H3G_028 HL_27530.3 | |
| HL_11JJ_054 | 1/28/1816:1823 | No text annotation | homologous HL_8GLP_027 HL_63894.4 | |
| HL_11JJ_055 | 1/28/1864:1870 | No text annotation | homologous HL_8GLP_028 HL_34789.6 | |
| HL_11JJ_056 | 1/28/1886:1893 | No text annotation | homologous HL_8GLP_029 HL_47171.3 | |
| HL_11JJ_058 | 1/28/2006:2013 | No text annotation | homologous HL_9AXU_026 NA | |
| HL_11JJ_059 | 1/28/2317:2322 | No text annotation | homologous HL_8GLP_032 HL_34789.6 | |
| HL_11JJ_060 | 1/28/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.7 | |
| HL_11JJ_061 | 1/28/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.2 | |
| HL_11JJ_062 | 1/28/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.6 | |
| HL_11JJ_064 | 1/28/2523:2532 | No text annotation | homologous HL_8GLP_038 HL_77449.3 | |
| HL_11JJ_066 | 1/28/2578:2583 | No text annotation | homologous HL_8GLP_040 HL_34789.6 | |
| HL_11JJ_067 | 1/28/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.3 | |
| HL_11JJ_068 | 1/28/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_67772.3 | |
| HL_11JJ_070 | 1/28/2738:2742 | No text annotation | homologous HL_8GLP_044 HL_90436.5 | |
| HL_11JJ_071 | 1/28/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.4 | |
| HL_11JJ_072 | 1/28/2810:2816 | No text annotation | homologous HL_9PN5_041 HL_34789.6 | |
| HL_11JJ_073 | 1/28/2872:2877 | No text annotation | homologous HL_8GLP_047 HL_61337.6 | |
| HL_11JJ_074 | 1/28/3614:3618 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_11JJ_075 | 1/28/3639:3649 | No text annotation | homologous HL_9H3G_049 HL_87681.3 | |
| HL_11JJ_076 | 1/28/3668:3674 | No text annotation | homologous HL_9H3G_050 HL_34789.6 | |
| HL_11JJ_077 | 1/28/3724:3729 | No text annotation | homologous HL_9PN5_046 HL_34789.6 | |
| HL_11JJ_078 | 1/28/3757:3767 | No text annotation | homologous HL_9H3G_052 HL_82185.3 | |
| HL_11JJ_079 | 1/28/3796:3804 | No text annotation | homologous HL_9PN5_048 HL_77449.3 | |
| HL_11JJ_080 | 1/28/3873:3882 | No text annotation | homologous HL_9PN5_049 HL_78372.3 | |
| HL_11JJ_081 | 1/28/4193:4201 | LSU P loop | homologous HL_8GLP_059 HL_11974.4 | |
| HL_11JJ_082 | 1/28/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.3 | |
| HL_11JJ_083 | 1/28/4250:4258 | No text annotation | homologous HL_8GLP_061 HL_02452.3 | |
| HL_11JJ_084 | 1/28/4270:4277 | No text annotation | homologous HL_8GLP_062 HL_52651.4 | |
| HL_11JJ_085 | 1/28/4301:4309 | No text annotation | homologous HL_9H3G_059 HL_15296.3 | |
| HL_11JJ_086 | 1/28/4321:4326 | No text annotation | homologous HL_8GLP_064 HL_34789.6 | |
| HL_11JJ_087 | 1/28/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_11JJ_088 | 1/28/4417:4425 | No text annotation | homologous HL_9H3G_062 HL_52011.3 | |
| HL_11JJ_089 | 1/28/4474:4481 | No text annotation | homologous HL_8GLP_067 HL_02262.1 | |
| HL_11JJ_090 | 1/28/4497:4503 | No text annotation | homologous HL_9PN5_061 HL_02262.1 | |
| HL_11JJ_091 | 1/28/4540:4545 | No text annotation | homologous HL_8GLP_069 HL_34789.6 | |
| HL_11JJ_092 | 1/28/4603:4608 | No text annotation | homologous HL_8GLP_070 HL_34789.6 | |
| HL_11JJ_093 | 1/28/4646:4651 | No text annotation | homologous HL_8GLP_071 HL_12125.4 | |
| HL_11JJ_094 | 1/28/4688:4702 | No text annotation | homologous HL_9H3G_068 HL_53269.4 | |
| HL_11JJ_095 | 1/28/4906:4915 | No text annotation | homologous HL_8GLP_074 HL_31089.3 | |
| HL_11JJ_096 | 1/28/4975:4983 | No text annotation | homologous HL_8GLP_075 HL_37889.3 | |
| HL_11JJ_097 | 1/58/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.3 | |
| HL_11JJ_098 | 1/58/107:112 | No text annotation | homologous HL_9AXU_073 HL_23875.1 | |
| HL_11JJ_099 | 1/58/121:129 | No text annotation | ||
| HL_11JJ_100 | 1/6/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.2 | |
| HL_11JJ_101 | 1/6/36:41 | No text annotation | homologous HL_8QYX_072 HL_59381.4 | |
| HL_11JJ_102 | 1/6/86:91 | No text annotation | homologous HL_8QYX_073 HL_34789.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_11JJ_002 | No text annotation | ||
| HL_11JJ_003 | No text annotation | ||
| HL_11JJ_004 | No text annotation | ||
| HL_11JJ_007 | No text annotation | ||
| HL_11JJ_011 | No text annotation | ||
| HL_11JJ_014 | No text annotation | ||
| HL_11JJ_016 | No text annotation | ||
| HL_11JJ_017 | No text annotation | ||
| HL_11JJ_021 | No text annotation | ||
| HL_11JJ_025 | No text annotation | ||
| HL_11JJ_028 | No text annotation | ||
| HL_11JJ_029 | No text annotation | ||
| HL_11JJ_030 | No text annotation | ||
| HL_11JJ_053 | No text annotation | ||
| HL_11JJ_057 | No text annotation | ||
| HL_11JJ_063 | No text annotation | ||
| HL_11JJ_065 | No text annotation | ||
| HL_11JJ_069 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_11JJ_001 | 1/18/23:25, 1/18/649:651 | Isolated non-canonical cWW pair | geometric IL_9H3G_117 IL_01003.6 | |
| IL_11JJ_002 | 1/18/34:40, 1/18/514:521 | No text annotation | ||
| IL_11JJ_003 | 1/18/41:47, 1/18/479:481 | No text annotation | homologous IL_9PN5_145 IL_88082.4 | |
| IL_11JJ_005 | 1/18/57:62, 1/18/86:88 | No text annotation | homologous IL_9H3G_160 IL_61299.8 | |
| IL_11JJ_007 | 1/18/108:110, 1/18/351:353 | Isolated non-canonical cWW pair | geometric IL_8OI5_037 IL_71625.5 | |
| IL_11JJ_008 | 1/18/110:112, 1/18/349:351 | Isolated non-canonical cWW pair | geometric IL_8GLP_197 IL_01003.6 | |
| IL_11JJ_009 | 1/18/112:115, 1/18/348:349 | No text annotation | homologous IL_9H3G_163 IL_71421.5 | |
| IL_11JJ_010 | 1/18/116:121, 1/18/343:347 | No text annotation | homologous IL_9PN5_151 IL_31545.3 | |
| IL_11JJ_011 | 1/18/145:151, 1/18/167:174 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_11JJ_014 | 1/18/216:219, 1/18/302:309 | No text annotation | ||
| IL_11JJ_015 | 1/18/223:288, 1/18/295:298 | No text annotation | ||
| IL_11JJ_016 | 1/18/312:314, 1/18/336:337 | Single bulged A | homologous IL_9H3G_171 IL_14190.4 | |
| IL_11JJ_018 | 1/18/359:364, 1/18/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.6 | |
| IL_11JJ_019 | 1/18/366:371, 1/18/393:394 | No text annotation | geometric IL_8GLP_211 IL_01372.3 | |
| IL_11JJ_020 | 1/18/411:413, 1/18/424:429 | No text annotation | homologous IL_9H3G_175 IL_93336.3 | |
| IL_11JJ_021 | 1/18/437:439, 1/18/454:456 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.4 | |
| IL_11JJ_022 | 1/18/487:489, 1/18/511:512 | Single bulged U | homologous IL_9H3G_178 IL_97561.7 | |
| IL_11JJ_023 | 1/18/491:496, 1/18/506:509 | No text annotation | ||
| IL_11JJ_027 | 1/18/663:665, 1/18/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_01003.6 | |
| IL_11JJ_028 | 1/18/665:671, 1/18/1161:1162 | No text annotation | homologous IL_9PN5_174 IL_20847.3 | |
| IL_11JJ_029 | 1/18/673:675, 1/18/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.6 | |
| IL_11JJ_030 | 1/18/676:680, 1/18/1025:1029 | No text annotation | homologous IL_9H3G_191 IL_05821.3 | |
| IL_11JJ_034 | 1/18/802:803, 1/18/860:863 | No text annotation | homologous IL_9H3G_192 IL_73108.4 | |
| IL_11JJ_035 | 1/18/805:807, 1/18/856:858 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.5 | |
| IL_11JJ_036 | 1/18/807:815, 1/18/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.4 | |
| IL_11JJ_038 | 1/18/877:879, 1/18/907:909 | No text annotation | homologous IL_9H3G_195 NA | |
| IL_11JJ_039 | 1/18/922:923, 1/18/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.4 | |
| IL_11JJ_040 | 1/18/925:927, 1/18/1014:1017 | Isolated non-canonical cWW pair | homologous IL_9H3G_198 IL_01003.6 | |
| IL_11JJ_041 | 1/18/928:931, 1/18/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.4 | |
| IL_11JJ_042 | 1/18/931:935, 1/18/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.4 | |
| IL_11JJ_043 | 1/18/942:945, 1/18/981:984 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.4 | |
| IL_11JJ_044 | 1/18/952:956, 1/18/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_11JJ_045 | 1/18/1042:1047, 1/18/1071:1073 | No text annotation | homologous IL_9PN5_189 IL_31690.1 | |
| IL_11JJ_046 | 1/18/1047:1051, 1/18/1067:1071 | No text annotation | homologous IL_9H3G_204 IL_05821.3 | |
| IL_11JJ_047 | 1/18/1091:1093, 1/18/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.4 | |
| IL_11JJ_048 | 1/18/1098:1103, 1/18/1129:1134 | No text annotation | geometric IL_3IGI_015 IL_02020.1 | |
| IL_11JJ_049 | 1/18/1108:1110, 1/18/1123:1124 | Minor groove platform | geometric IL_8GLP_246 IL_41261.1 | |
| IL_11JJ_050 | 1/18/1168:1175, 1/18/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.3 | |
| IL_11JJ_051 | 1/18/1203:1204, 1/18/1694:1696 | Single bulged A | homologous IL_9PN5_195 IL_14190.4 | |
| IL_11JJ_052 | 1/18/1206:1208, 1/18/1691:1692 | Single bulged G | homologous IL_9PN5_196 IL_28408.4 | |
| IL_11JJ_053 | 1/18/1214:1217, 1/18/1681:1685 | No text annotation | homologous IL_9PN5_197 IL_63596.14 | |
| IL_11JJ_054 | 1/18/1230:1232, 1/18/1526:1528 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.6 | |
| IL_11JJ_055 | 1/18/1235:1236, 1/18/1521:1523 | Minor groove platform | homologous IL_9H3G_214 IL_98469.1 | |
| IL_11JJ_056 | 1/18/1270:1272, 1/18/1510:1512 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.6 | |
| IL_11JJ_058 | 1/18/1325:1327, 1/18/1502:1503 | Single bulged U | homologous IL_9H3G_218 IL_97561.7 | |
| IL_11JJ_059 | 1/18/1329:1333, 1/18/1498:1500 | No text annotation | geometric IL_9PN5_204 IL_82453.3 | |
| IL_11JJ_060 | 1/18/1329:1335, 1/18/1492:1500 | No text annotation | ||
| IL_11JJ_061 | 1/18/1333:1335, 1/18/1492:1498 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_11JJ_062 | 1/18/1337:1338, 1/18/1488:1490 | Single bulged A | homologous IL_9PN5_209 IL_14190.4 | |
| IL_11JJ_063 | 1/18/1347:1349, 1/18/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.4 | |
| IL_11JJ_064 | 1/18/1363:1365, 1/18/1374:1375 | Minor groove platform | homologous IL_9H3G_224 IL_41261.1 | |
| IL_11JJ_065 | 1/18/1402:1405, 1/18/1441:1444 | No text annotation | homologous IL_9H3G_226 IL_78800.4 | |
| IL_11JJ_067 | 1/18/1537:1539, 1/18/1594:1596 | Isolated non-canonical cWW pair | homologous IL_9H3G_229 IL_71625.5 | |
| IL_11JJ_068 | 1/18/1541:1558, 1/18/1577:1592 | No text annotation | ||
| IL_11JJ_070 | 1/18/1604:1610, 1/18/1629:1635 | No text annotation | ||
| IL_11JJ_071 | 1/18/1700:1702, 1/18/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.3 | |
| IL_11JJ_072 | 1/18/1702:1705, 1/18/1829:1833 | No text annotation | homologous IL_9PN5_221 IL_25873.4 | |
| IL_11JJ_073 | 1/18/1706:1708, 1/18/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.6 | |
| IL_11JJ_074 | 1/18/1708:1711, 1/18/1822:1826 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_11JJ_075 | 1/18/1714:1716, 1/18/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.6 | |
| IL_11JJ_076 | 1/18/1717:1720, 1/18/1813:1816 | Double sheared | homologous IL_9PN5_225 IL_58355.4 | |
| IL_11JJ_077 | 1/18/1720:1722, 1/18/1812:1813 | Single bulged U | homologous IL_9PN5_226 IL_97561.7 | |
| IL_11JJ_078 | 1/18/1729:1731, 1/18/1803:1805 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_11JJ_079 | 1/18/1733:1736, 1/18/1798:1801 | Double sheared | homologous IL_9H3G_241 IL_58355.4 | |
| IL_11JJ_080 | 1/18/1739:1741, 1/18/1793:1795 | Isolated non-canonical cWW pair | geometric IL_8GLP_283 IL_01003.6 | |
| IL_11JJ_081 | 1/18/1742:1746, 1/18/1788:1792 | No text annotation | homologous IL_9PN5_231 IL_15190.4 | |
| IL_11JJ_084 | 1/28/6:7, 1/58/149:151 | Single bulged C | homologous IL_8GLP_001 IL_05642.5 | |
| IL_11JJ_085 | 1/28/12:14, 1/58/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.7 | |
| IL_11JJ_086 | 1/28/16:18, 1/58/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_01003.6 | |
| IL_11JJ_087 | 1/28/26:27, 1/28/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.5 | |
| IL_11JJ_088 | 1/28/30:37, 1/28/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.3 | |
| IL_11JJ_089 | 1/28/81:88, 1/28/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.5 | |
| IL_11JJ_090 | 1/28/118:121, 1/28/152:153 | No text annotation | geometric IL_8GLP_007 IL_36175.2 | |
| IL_11JJ_091 | 1/28/118:122, 1/28/147:153 | Kink-turn with embedded cWW pair | geometric IL_8GLP_287 IL_65996.1 | |
| IL_11JJ_092 | 1/28/121:122, 1/28/147:152 | No text annotation | homologous IL_9AXU_006 IL_10396.3 | |
| IL_11JJ_093 | 1/28/125:126, 1/28/142:144 | Single bulged C | homologous IL_8GLP_009 IL_05642.5 | |
| IL_11JJ_094 | 1/28/168:173, 1/28/263:267 | No text annotation | ||
| IL_11JJ_096 | 1/28/195:196, 1/28/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.5 | |
| IL_11JJ_097 | 1/28/199:201, 1/28/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.7 | |
| IL_11JJ_098 | 1/28/339:342, 1/58/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_41261.1 | |
| IL_11JJ_099 | 1/28/348:350, 1/58/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.4 | |
| IL_11JJ_100 | 1/28/387:390, 1/28/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.3 | |
| IL_11JJ_101 | 1/28/415:421, 1/58/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.3 | |
| IL_11JJ_102 | 1/28/443:446, 1/28/1300:1304 | No text annotation | ||
| IL_11JJ_103 | 1/28/448:450, 1/28/1297:1298 | Single bulged C | geometric IL_8GLP_083 IL_05642.5 | |
| IL_11JJ_104 | 1/28/459:460, 1/28/695:697 | Single bulged C | homologous IL_8GLP_024 IL_05642.5 | |
| IL_11JJ_105 | 1/28/462:464, 1/28/691:693 | Isolated non-canonical cWW pair | homologous IL_8GLP_025 IL_01003.6 | |
| IL_11JJ_106 | 1/28/466:472, 1/28/682:689 | No text annotation | ||
| IL_11JJ_107 | 1/28/481:482, 1/28/672:673 | Single bulged C | geometric IL_7KGA_004 IL_05642.5 | |
| IL_11JJ_108 | 1/28/482:485, 1/28/671:672 | No text annotation | ||
| IL_11JJ_109 | 1/28/487:488, 1/28/665:669 | No text annotation | geometric IL_9I0V_004 IL_71421.5 | |
| IL_11JJ_110 | 1/28/491:493, 1/28/661:662 | Single bulged U | geometric IL_4WF9_030 IL_97561.7 | |
| IL_11JJ_111 | 1/28/497:499, 1/28/656:657 | Single bulged C | geometric IL_9H3G_155 IL_05642.5 | |
| IL_11JJ_112 | 1/28/508:510, 1/28/649:650 | Single bulged A | homologous IL_8GLP_032 IL_14190.4 | |
| IL_11JJ_115 | 1/28/709:710, 1/28/1286:1288 | Single bulged G | geometric IL_8GLP_034 IL_28408.4 | |
| IL_11JJ_116 | 1/28/723:724, 1/28/942:945 | No text annotation | geometric IL_8GLP_035 IL_09092.1 | |
| IL_11JJ_117 | 1/28/727:731, 1/28/938:939 | No text annotation | geometric IL_8GLP_036 IL_75501.2 | |
| IL_11JJ_118 | 1/28/732:735, 1/28/928:937 | No text annotation | ||
| IL_11JJ_119 | 1/28/737:739, 1/28/923:926 | No text annotation | geometric IL_8B0X_156 IL_44609.4 | |
| IL_11JJ_120 | 1/28/745:752, 1/28/911:919 | No text annotation | geometric IL_8GLP_040 IL_25001.2 | |
| IL_11JJ_121 | 1/28/1074:1076, 1/28/1234:1236 | Isolated non-canonical cWW pair | geometric IL_9PN5_229 IL_01003.6 | |
| IL_11JJ_123 | 1/28/1082:1084, 1/28/1213:1217 | No text annotation | geometric IL_8GLP_043 IL_84227.1 | |
| IL_11JJ_124 | 1/28/1086:1087, 1/28/1209:1211 | Single bulged C | geometric IL_8GLP_044 IL_05642.5 | |
| IL_11JJ_126 | 1/28/1173:1175, 1/28/1186:1188 | Isolated cWH basepair | geometric IL_8GLP_047 IL_10892.4 | |
| IL_11JJ_127 | 1/28/1357:1360, 1/28/1379:1382 | No text annotation | ||
| IL_11JJ_128 | 1/28/1357:1361, 1/28/1376:1382 | No text annotation | ||
| IL_11JJ_129 | 1/28/1360:1361, 1/28/1376:1379 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_11JJ_130 | 1/28/1425:1429, 1/28/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_11JJ_131 | 1/28/1431:1434, 1/28/1450:1453 | Double sheared | homologous IL_8GLP_052 IL_58355.4 | |
| IL_11JJ_132 | 1/28/1467:1468, 1/28/1496:1498 | Single bulged A | homologous IL_8GLP_053 IL_14190.4 | |
| IL_11JJ_133 | 1/28/1474:1476, 1/28/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.5 | |
| IL_11JJ_134 | 1/28/1520:1522, 1/28/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8GLP_289 IL_01003.6 | |
| IL_11JJ_135 | 1/28/1522:1526, 1/28/1648:1655 | No text annotation | homologous IL_8GLP_290 IL_73855.3 | |
| IL_11JJ_136 | 1/28/1550:1551, 1/28/1576:1578 | Single bulged G | homologous IL_8GLP_058 IL_28408.4 | |
| IL_11JJ_137 | 1/28/1551:1555, 1/28/1572:1576 | No text annotation | homologous IL_8GLP_059 IL_15190.4 | |
| IL_11JJ_138 | 1/28/1586:1589, 1/28/1605:1607 | No text annotation | homologous IL_8GLP_060 IL_36931.4 | |
| IL_11JJ_139 | 1/28/1590:1592, 1/28/1603:1604 | Single bulged U | homologous IL_8GLP_061 IL_97561.7 | |
| IL_11JJ_140 | 1/28/1624:1626, 1/28/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.3 | |
| IL_11JJ_141 | 1/28/1671:1673, 1/28/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.5 | |
| IL_11JJ_142 | 1/28/1686:1688, 1/28/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_11JJ_143 | 1/28/1723:1725, 1/28/1838:1839 | Single bulged G | homologous IL_8GLP_066 IL_28408.4 | |
| IL_11JJ_144 | 1/28/1732:1737, 1/28/1792:1797 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_11JJ_145 | 1/28/1737:1738, 1/28/1790:1792 | Minor groove platform | homologous IL_9H3G_045 IL_41261.1 | |
| IL_11JJ_146 | 1/28/1739:1744, 1/28/1786:1789 | No text annotation | homologous IL_9H3G_046 IL_16301.3 | |
| IL_11JJ_147 | 1/28/1746:1749, 1/28/1781:1784 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.4 | |
| IL_11JJ_148 | 1/28/1749:1751, 1/28/1779:1781 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.6 | |
| IL_11JJ_149 | 1/28/1753:1756, 1/28/1776:1777 | No text annotation | ||
| IL_11JJ_151 | 1/28/1814:1816, 1/28/1823:1824 | Single bulged G | homologous IL_8GLP_072 IL_28408.4 | |
| IL_11JJ_152 | 1/28/1858:1860, 1/28/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.6 | |
| IL_11JJ_154 | 1/28/1905:1909, 1/28/2067:2071 | UAA/GAN | homologous IL_8GLP_075 IL_08938.3 | |
| IL_11JJ_155 | 1/28/1911:1918, 1/28/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.3 | |
| IL_11JJ_156 | 1/28/1918:1920, 1/28/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.4 | |
| IL_11JJ_157 | 1/28/1920:1922, 1/28/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.5 | |
| IL_11JJ_158 | 1/28/1926:1933, 1/28/2053:2058 | No text annotation | homologous IL_8GLP_079 IL_39054.3 | |
| IL_11JJ_159 | 1/28/1933:1944, 1/28/2038:2053 | No text annotation | homologous IL_8GLP_080 IL_34501.3 | |
| IL_11JJ_160 | 1/28/1946:1948, 1/28/2035:2036 | Single bulged U | homologous IL_8GLP_081 IL_97561.7 | |
| IL_11JJ_161 | 1/28/1957:1965, 1/28/2022:2026 | Kink-turn | homologous IL_8GLP_082 IL_99692.4 | |
| IL_11JJ_162 | 1/28/1973:1977, 1/28/1989:1993 | No text annotation | homologous IL_9AXU_052 NA | |
| IL_11JJ_163 | 1/28/2001:2005, 1/28/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.4 | |
| IL_11JJ_164 | 1/28/2083:2085, 1/28/2272:2273 | Single bulged C | homologous IL_8GLP_083 IL_05642.5 | |
| IL_11JJ_165 | 1/28/2290:2292, 1/28/2342:2345 | No text annotation | homologous IL_8GLP_084 IL_84227.1 | |
| IL_11JJ_166 | 1/28/2299:2301, 1/28/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.4 | |
| IL_11JJ_167 | 1/28/2302:2309, 1/28/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.3 | |
| IL_11JJ_168 | 1/28/2312:2314, 1/28/2325:2326 | Single bulged A | homologous IL_8GLP_087 IL_14190.4 | |
| IL_11JJ_169 | 1/28/2358:2364, 1/28/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.3 | |
| IL_11JJ_170 | 1/28/2415:2419, 1/28/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.3 | |
| IL_11JJ_171 | 1/28/2446:2450, 1/28/2509:2514 | UAA/GAN | homologous IL_8GLP_091 IL_08938.3 | |
| IL_11JJ_173 | 1/28/2542:2547, 1/28/2772:2774 | No text annotation | homologous IL_9AXU_061 IL_75527.4 | |
| IL_11JJ_174 | 1/28/2549:2550, 1/28/2768:2770 | Single bulged U | homologous IL_8GLP_095 IL_97561.7 | |
| IL_11JJ_175 | 1/28/2589:2593, 1/28/2752:2756 | No text annotation | homologous IL_8GLP_096 IL_15190.4 | |
| IL_11JJ_176 | 1/28/2613:2615, 1/28/2722:2726 | No text annotation | geometric IL_9H3G_015 IL_70784.2 | |
| IL_11JJ_177 | 1/28/2646:2648, 1/28/2685:2688 | No text annotation | homologous IL_8GLP_099 IL_87316.4 | |
| IL_11JJ_178 | 1/28/2651:2653, 1/28/2681:2682 | Single bulged G | homologous IL_8GLP_100 IL_28408.4 | |
| IL_11JJ_179 | 1/28/2656:2662, 1/28/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.3 | |
| IL_11JJ_181 | 1/28/2832:2838, 1/28/3850:3853 | No text annotation | homologous IL_9PN5_072 IL_89862.3 | |
| IL_11JJ_182 | 1/28/2844:2846, 1/28/3842:3844 | No text annotation | homologous IL_9H3G_084 IL_10432.3 | |
| IL_11JJ_183 | 1/28/2847:2850, 1/28/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8GLP_304 IL_74641.4 | |
| IL_11JJ_184 | 1/28/2847:2855, 1/28/3837:3841 | No text annotation | geometric IL_8GLP_305 IL_80252.3 | |
| IL_11JJ_185 | 1/28/2850:2855, 1/28/3837:3840 | No text annotation | homologous IL_8GLP_107 IL_28217.3 | |
| IL_11JJ_186 | 1/28/2867:2872, 1/28/2877:2883 | No text annotation | homologous IL_8GLP_108 IL_20700.3 | |
| IL_11JJ_187 | 1/28/2889:2891, 1/28/3610:3612 | Isolated non-canonical cWW pair | homologous IL_9PN5_078 IL_01003.6 | |
| IL_11JJ_188 | 1/28/2896:2897, 1/28/3602:3605 | No text annotation | homologous IL_8GLP_110 IL_18824.3 | |
| IL_11JJ_189 | 1/28/3632:3633, 1/28/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.4 | |
| IL_11JJ_190 | 1/28/3660:3665, 1/28/3677:3684 | No text annotation | homologous IL_8GLP_114 IL_14684.3 | |
| IL_11JJ_191 | 1/28/3700:3703, 1/28/3749:3750 | No text annotation | homologous IL_9PN5_082 IL_55206.3 | |
| IL_11JJ_192 | 1/28/3704:3705, 1/28/3745:3748 | No text annotation | homologous IL_8GLP_117 IL_71421.5 | |
| IL_11JJ_193 | 1/28/3708:3714, 1/28/3739:3742 | No text annotation | ||
| IL_11JJ_194 | 1/28/3715:3721, 1/28/3732:3738 | No text annotation | homologous IL_9H3G_097 IL_65359.3 | |
| IL_11JJ_195 | 1/28/3780:3781, 1/28/3811:3814 | No text annotation | geometric IL_9PN5_086 IL_24886.4 | |
| IL_11JJ_196 | 1/28/3781:3792, 1/28/3808:3811 | No text annotation | homologous IL_8GLP_307 IL_84014.3 | |
| IL_11JJ_197 | 1/28/3895:3898, 1/28/4563:4565 | No text annotation | homologous IL_9PN5_088 IL_75527.4 | |
| IL_11JJ_198 | 1/28/3900:3902, 1/28/4558:4561 | No text annotation | homologous IL_8GLP_129 IL_80025.3 | |
| IL_11JJ_199 | 1/28/3913:3915, 1/28/4388:4389 | Single bulged U | homologous IL_9AXU_087 IL_97561.7 | |
| IL_11JJ_200 | 1/28/3916:3917, 1/28/4384:4387 | Minor groove platform | homologous IL_8GLP_131 IL_98469.1 | |
| IL_11JJ_201 | 1/28/3927:3929, 1/28/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.4 | |
| IL_11JJ_202 | 1/28/4082:4088, 1/28/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.3 | |
| IL_11JJ_204 | 1/28/4191:4192, 1/28/4202:4204 | AG tHS outside loop | homologous IL_8GLP_137 IL_14190.4 | |
| IL_11JJ_205 | 1/28/4243:4245, 1/28/4263:4267 | No text annotation | homologous IL_9PN5_095 IL_14250.3 | |
| IL_11JJ_206 | 1/28/4291:4293, 1/28/4317:4318 | Single bulged A | geometric IL_9AXU_093 IL_14190.4 | |
| IL_11JJ_207 | 1/28/4295:4298, 1/28/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.4 | |
| IL_11JJ_208 | 1/28/4347:4350, 1/28/4364:4365 | No text annotation | homologous IL_8GLP_141 IL_57267.1 | |
| IL_11JJ_209 | 1/28/4400:4403, 1/28/4440:4444 | No text annotation | homologous IL_9PN5_098 IL_60246.1 | |
| IL_11JJ_210 | 1/28/4403:4405, 1/28/4439:4440 | No text annotation | homologous IL_9H3G_118 IL_46637.4 | |
| IL_11JJ_211 | 1/28/4405:4407, 1/28/4435:4439 | No text annotation | homologous IL_8GLP_143 IL_36931.4 | |
| IL_11JJ_212 | 1/28/4412:4416, 1/28/4426:4430 | No text annotation | homologous IL_9PN5_101 IL_87767.4 | |
| IL_11JJ_213 | 1/28/4453:4454, 1/28/4526:4528 | No text annotation | homologous IL_8GLP_146 IL_46637.4 | |
| IL_11JJ_214 | 1/28/4456:4458, 1/28/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.1 | |
| IL_11JJ_215 | 1/28/4458:4459, 1/28/4517:4520 | No text annotation | homologous IL_8GLP_148 IL_44609.4 | |
| IL_11JJ_216 | 1/28/4466:4468, 1/28/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.6 | |
| IL_11JJ_217 | 1/28/4466:4470, 1/28/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_11JJ_218 | 1/28/4468:4470, 1/28/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_11JJ_219 | 1/28/4495:4497, 1/28/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.6 | |
| IL_11JJ_220 | 1/28/4537:4538, 1/28/4547:4549 | Single bulged A | homologous IL_8GLP_154 IL_14190.4 | |
| IL_11JJ_221 | 1/28/4580:4582, 1/28/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.4 | |
| IL_11JJ_222 | 1/28/4582:4585, 1/28/4717:4721 | Double sheared | homologous IL_9AXU_107 IL_58355.4 | |
| IL_11JJ_223 | 1/28/4590:4592, 1/28/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.5 | |
| IL_11JJ_224 | 1/28/4596:4603, 1/28/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.1 | |
| IL_11JJ_225 | 1/28/4624:4629, 1/28/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.1 | |
| IL_11JJ_226 | 1/28/4632:4637, 1/28/4662:4666 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_11JJ_227 | 1/28/4638:4640, 1/28/4659:4661 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.4 | |
| IL_11JJ_228 | 1/28/4641:4642, 1/28/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.4 | |
| IL_11JJ_229 | 1/28/4680:4685, 1/28/4705:4710 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_11JJ_230 | 1/28/4756:4766, 1/28/4868:4877 | No text annotation | ||
| IL_11JJ_231 | 1/28/4769:4771, 1/28/4863:4865 | Isolated non-canonical cWW pair | homologous IL_8GLP_169 IL_71625.5 | |
| IL_11JJ_233 | 1/28/4885:4888, 1/28/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_71194.4 | |
| IL_11JJ_234 | 1/28/4890:4896, 1/28/4924:4929 | No text annotation | ||
| IL_11JJ_235 | 1/28/4972:4975, 1/28/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9AXU_117 IL_71194.4 | |
| IL_11JJ_236 | 1/28/4992:4994, 1/28/5057:5059 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.6 | |
| IL_11JJ_237 | 1/28/4996:4997, 1/28/5053:5055 | Major groove platform | geometric IL_7EOG_001 IL_48076.10 | |
| IL_11JJ_238 | 1/28/5000:5002, 1/28/5045:5050 | No text annotation | homologous IL_9H3G_143 IL_00086.3 | |
| IL_11JJ_239 | 1/28/5003:5009, 1/28/5039:5044 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_11JJ_240 | 1/28/5012:5014, 1/28/5035:5036 | Single bulged C | homologous IL_8GLP_178 IL_05642.5 | |
| IL_11JJ_241 | 1/28/5014:5017, 1/28/5032:5035 | Double sheared; A in syn | geometric IL_8OI5_132 IL_58355.4 | |
| IL_11JJ_242 | 1/58/64:66, 1/58/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.1 | |
| IL_11JJ_243 | 1/6/15:16, 1/6/62:64 | Single bulged C | homologous IL_8QYX_165 IL_05642.5 | |
| IL_11JJ_244 | 1/6/21:27, 1/6/52:57 | No text annotation | homologous IL_8QYX_166 IL_41504.2 | |
| IL_11JJ_245 | 1/6/28:29, 1/6/48:51 | No text annotation | homologous IL_8QYX_167 IL_73108.4 | |
| IL_11JJ_246 | 1/6/32:36, 1/6/41:45 | Symmetric double minor groove platform | homologous IL_8QYX_168 IL_58103.14 | |
| IL_11JJ_247 | 1/6/71:78, 1/6/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8QYX_169 IL_62879.1 | |
| IL_11JJ_248 | 1/6/79:81, 1/6/95:97 | No text annotation | homologous IL_8QYX_170 IL_01334.1 | |
| IL_11JJ_249 | 1/6/82:85, 1/6/92:94 | Isolated non-canonical cWW pair | homologous IL_8QYX_171 IL_01003.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_11JJ_004 | Minor groove platform | ||
| IL_11JJ_006 | No text annotation | ||
| IL_11JJ_012 | Isolated cWH basepair | ||
| IL_11JJ_013 | No text annotation | ||
| IL_11JJ_017 | No text annotation | ||
| IL_11JJ_024 | Isolated non-canonical cWW pair | ||
| IL_11JJ_025 | No text annotation | ||
| IL_11JJ_026 | Kink-turn related | ||
| IL_11JJ_031 | Isolated non-canonical cWW pair | ||
| IL_11JJ_032 | No text annotation | ||
| IL_11JJ_033 | No text annotation | ||
| IL_11JJ_037 | Isolated non-canonical cWW pair | ||
| IL_11JJ_057 | No text annotation | ||
| IL_11JJ_066 | Single bulged G | ||
| IL_11JJ_069 | No text annotation | ||
| IL_11JJ_082 | No text annotation | ||
| IL_11JJ_083 | Single stack bend | ||
| IL_11JJ_095 | Major groove platform | ||
| IL_11JJ_113 | Single stack bend | ||
| IL_11JJ_114 | No text annotation | ||
| IL_11JJ_122 | Single stack bend | ||
| IL_11JJ_125 | Single stack bend | ||
| IL_11JJ_150 | Single stack bend | ||
| IL_11JJ_153 | No text annotation | ||
| IL_11JJ_172 | Minor groove platform | ||
| IL_11JJ_180 | Single bulged G | ||
| IL_11JJ_203 | Single stack bend | ||
| IL_11JJ_232 | No text annotation | ||
| IL_11JJ_250 | Isolated non-canonical cWW pair | ||
| IL_11JJ_251 | No text annotation | ||
| IL_11JJ_252 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_11JJ_001 | 1/18/40:41, 1/18/481:487, 1/18/512:514 | No text annotation | homologous J3_9H3G_028 J3_58657.3 | |
| J3_11JJ_002 | 1/18/682:685, 1/18/917:922, 1/18/1022:1023 | No text annotation | ||
| J3_11JJ_003 | 1/18/682:685, 1/18/917:923, 1/18/1019:1023 | No text annotation | ||
| J3_11JJ_005 | 1/18/938:941, 1/18/985:993, 1/18/1000:1004 | No text annotation | homologous J3_9PN5_033 NA | |
| J3_11JJ_006 | 1/18/1094:1096, 1/18/1136:1140, 1/18/1147:1151 | No text annotation | ||
| J3_11JJ_007 | 1/18/1218:1221, 1/18/1645:1651, 1/18/1673:1680 | No text annotation | homologous J3_9PN5_035 J3_85722.3 | |
| J3_11JJ_008 | 1/18/1225:1228, 1/18/1530:1532, 1/18/1638:1641 | No text annotation | homologous J3_9H3G_036 J3_44359.3 | |
| J3_11JJ_009 | 1/18/1237:1244, 1/18/1255:1266, 1/18/1516:1520 | No text annotation | homologous J3_9PN5_037 J3_88451.3 | |
| J3_11JJ_010 | 1/18/1272:1277, 1/18/1320:1324, 1/18/1504:1510 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_11JJ_011 | 1/18/1340:1345, 1/18/1384:1389, 1/18/1481:1486 | No text annotation | homologous J3_9PN5_039 NA | |
| J3_11JJ_012 | 1/18/1350:1351, 1/18/1360:1363, 1/18/1375:1379 | No text annotation | homologous J3_9PN5_040 J3_76043.6 | |
| J3_11JJ_013 | 1/18/1391:1399, 1/18/1447:1456, 1/18/1470:1479 | No text annotation | ||
| J3_11JJ_014 | 1/18/1532:1536, 1/18/1597:1604, 1/18/1635:1638 | No text annotation | homologous J3_9H3G_043 J3_03192.3 | |
| J3_11JJ_015 | 1/28/112:116, 1/28/155:160, 1/28/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_11JJ_016 | 1/28/351:367, 1/28/374:379, 1/58/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.3 | |
| J3_11JJ_017 | 1/28/380:387, 1/28/414:415, 1/58/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.3 | |
| J3_11JJ_018 | 1/28/380:390, 1/28/401:415, 1/58/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.3 | |
| J3_11JJ_019 | 1/28/451:455, 1/28/701:705, 1/28/1292:1296 | No text annotation | homologous J3_8GLP_027 NA | |
| J3_11JJ_020 | 1/28/1531:1537, 1/28/1622:1624, 1/28/1640:1643 | No text annotation | homologous J3_9PN5_008 J3_46658.3 | |
| J3_11JJ_021 | 1/28/1545:1548, 1/28/1580:1584, 1/28/1609:1614 | No text annotation | ||
| J3_11JJ_022 | 1/28/1726:1727, 1/28/1802:1806, 1/28/1832:1837 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_11JJ_023 | 1/28/1969:1971, 1/28/1995:2001, 1/28/2016:2018 | No text annotation | geometric J3_5D8H_001 J3_37832.2 | |
| J3_11JJ_024 | 1/28/2393:2399, 1/28/2805:2807, 1/28/2819:2822 | No text annotation | homologous J3_9AXU_013 J3_05025.3 | |
| J3_11JJ_025 | 1/28/2402:2405, 1/28/2785:2791, 1/28/2800:2802 | No text annotation | homologous J3_9AXU_014 J3_76012.3 | |
| J3_11JJ_026 | 1/28/2440:2445, 1/28/2515:2519, 1/28/2536:2537 | No text annotation | homologous J3_8GLP_030 J3_94309.3 | |
| J3_11JJ_027 | 1/28/2451:2456, 1/28/2465:2476, 1/28/2501:2508 | No text annotation | ||
| J3_11JJ_028 | 1/28/2551:2555, 1/28/2572:2575, 1/28/2757:2767 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_11JJ_029 | 1/28/2575:2576, 1/28/2585:2589, 1/28/2756:2757 | No text annotation | homologous J3_8GLP_032 J3_05348.3 | |
| J3_11JJ_030 | 1/28/2598:2602, 1/28/2737:2738, 1/28/2742:2747 | No text annotation | homologous J3_9H3G_020 J3_08594.3 | |
| J3_11JJ_031 | 1/28/3937:3939, 1/28/4074:4078, 1/28/4168:4173 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_11JJ_032 | 1/28/4091:4094, 1/28/4114:4129, 1/28/4155:4158 | No text annotation | homologous J3_8GLP_008 NA | |
| J3_11JJ_033 | 1/28/4228:4230, 1/28/4331:4342, 1/28/4370:4375 | No text annotation | homologous J3_8GLP_034 J3_04772.3 | |
| J3_11JJ_034 | 1/28/4241:4243, 1/28/4267:4269, 1/28/4278:4283 | No text annotation | homologous J3_8GLP_009 J3_05327.3 | |
| J3_11JJ_035 | 1/28/4463:4466, 1/28/4491:4493, 1/28/4507:4513 | No text annotation | homologous J3_9PN5_022 J3_44047.3 | |
| J3_11JJ_036 | 1/28/4749:4754, 1/28/4879:4883, 1/28/4936:4951 | No text annotation | ||
| J3_11JJ_037 | 1/28/4970:4972, 1/28/4986:4991, 1/28/5060:5063 | No text annotation | homologous J3_8GLP_037 NA | |
| J3_11JJ_038 | 1/58/44:45, 1/58/58:64, 1/58/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.3 | |
| J3_11JJ_039 | 1/6/9:14, 1/6/65:66, 1/6/109:110 | No text annotation | homologous J3_8QYX_024 J3_26985.3 | |
| J4_11JJ_001 | 1/18/30:40, 1/18/514:527, 1/18/558:595, 1/18/641:644 | No text annotation | ||
| J4_11JJ_002 | 1/18/98:106, 1/18/355:357, 1/18/405:409, 1/18/431:432 | No text annotation | homologous J4_9PN5_010 J4_15241.4 | |
| J4_11JJ_003 | 1/18/671:673, 1/18/1032:1037, 1/18/1078:1089, 1/18/1160:1161 | No text annotation | homologous J4_9H3G_014 J4_14595.3 | |
| J4_11JJ_004 | 1/28/111:112, 1/28/278:283, 1/28/304:310, 1/28/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.3 | |
| J4_11JJ_005 | 1/28/196:199, 1/28/215:222, 1/28/226:228, 1/28/240:244 | No text annotation | ||
| J4_11JJ_006 | 1/28/712:713, 1/28/955:961, 1/28/971:977, 1/28/1278:1284 | No text annotation | ||
| J4_11JJ_007 | 1/28/2365:2371, 1/28/2389:2391, 1/28/2824:2829, 1/28/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_11JJ_008 | 1/28/2406:2410, 1/28/2434:2439, 1/28/2538:2539, 1/28/2777:2784 | No text annotation | homologous J4_9PN5_004 J4_17758.1 | |
| J4_11JJ_009 | 1/28/2618:2619, 1/28/2637:2642, 1/28/2692:2698, 1/28/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_11JJ_010 | 1/28/3634:3638, 1/28/3650:3654, 1/28/3690:3694, 1/28/3821:3826 | No text annotation | homologous J4_9AXU_007 J4_78485.3 | |
| J4_11JJ_011 | 1/28/3696:3698, 1/28/3752:3753, 1/28/3771:3780, 1/28/3814:3819 | No text annotation | homologous J4_8GLP_010 J4_21738.1 | |
| J4_11JJ_012 | 1/28/4231:4235, 1/28/4289:4291, 1/28/4318:4319, 1/28/4328:4330 | No text annotation | ||
| J4_11JJ_013 | 1/28/4231:4235, 1/28/4289:4293, 1/28/4317:4319, 1/28/4328:4330 | No text annotation | homologous J4_8GLP_012 J4_59590.3 | |
| J4_11JJ_014 | 1/28/4587:4590, 1/28/4620:4621, 1/28/4676:4678, 1/28/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J5_11JJ_001 | 1/18/30:34, 1/18/521:527, 1/18/558:563, 1/18/592:595, 1/18/641:644 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_11JJ_002 | 1/18/30:40, 1/18/514:527, 1/18/558:563, 1/18/592:595, 1/18/641:644 | No text annotation | ||
| J5_11JJ_003 | 1/18/53:56, 1/18/89:96, 1/18/434:436, 1/18/457:461, 1/18/468:474 | No text annotation | ||
| J5_11JJ_004 | 1/18/685:690, 1/18/736:744, 1/18/797:800, 1/18/865:874, 1/18/912:917 | No text annotation | ||
| J5_11JJ_005 | 1/28/19:21, 1/58/35:42, 1/58/101:106, 1/58/113:114, 1/58/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.3 | |
| J5_11JJ_006 | 1/28/1335:1340, 1/28/1516:1519, 1/28/1658:1661, 1/28/2288:2290, 1/28/2345:2351 | No text annotation | homologous J5_8GLP_002 J5_08384.3 | |
| J5_11JJ_007 | 1/28/2855:2863, 1/28/2887:2888, 1/28/3613:3614, 1/28/3618:3626, 1/28/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.3 | |
| J5_11JJ_008 | 1/28/3903:3910, 1/28/4392:4400, 1/28/4444:4453, 1/28/4528:4534, 1/28/4552:4557 | No text annotation | ||
| J5_11JJ_009 | 1/28/3920:3923, 1/28/4188:4191, 1/28/4204:4205, 1/28/4227:4228, 1/28/4375:4381 | No text annotation | homologous J5_9H3G_006 J5_96125.3 | |
| J6_11JJ_001 | 1/28/21:26, 1/28/57:67, 1/28/74:78, 1/28/105:109, 1/28/332:339, 1/58/33:35 | No text annotation | ||
| J6_11JJ_002 | 1/28/1352:1355, 1/28/1384:1388, 1/28/1395:1399, 1/28/1418:1421, 1/28/1464:1466, 1/28/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_11JJ_003 | 1/28/3920:3923, 1/28/4188:4191, 1/28/4204:4205, 1/28/4227:4230, 1/28/4331:4342, 1/28/4370:4381 | No text annotation | ||
| J7_11JJ_001 | 1/28/1666:1671, 1/28/1684:1685, 1/28/1852:1855, 1/28/1879:1884, 1/28/1895:1899, 1/28/2077:2078, 1/28/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_11JJ_004 | No text annotation |
Coloring options: