HL_11JJ_009

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

11JJ|1|18|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_009 not in the Motif Atlas

Homologous match to HL_9H3G_087

Geometric discrepancy: 0.1805

The information below is about HL_9H3G_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

11JJ|1|18|C|462
11JJ|1|18|C|463
11JJ|1|18|A|464
11JJ|1|18|A|465
11JJ|1|18|G|466
11JJ|1|18|G|467

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL14

Chain S6

40S ribosomal protein S6