HL_11JJ_012

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUCCACUUUAAAUCCUUUAACGAGGAUC

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|18|G|563
11JJ|1|18|A|564
11JJ|1|18|G|565
11JJ|1|18|U|566
11JJ|1|18|C|567
11JJ|1|18|C|568
11JJ|1|18|A|569
11JJ|1|18|C|570
11JJ|1|18|U|571
11JJ|1|18|U|572
11JJ|1|18|U|573
11JJ|1|18|A|574
11JJ|1|18|A|575
11JJ|1|18|A|576
11JJ|1|18|U|577
11JJ|1|18|C|578
11JJ|1|18|C|579
11JJ|1|18|U|580
11JJ|1|18|U|581
11JJ|1|18|U|582
11JJ|1|18|A|583
11JJ|1|18|A|584
11JJ|1|18|C|585
11JJ|1|18|G|586
11JJ|1|18|A|587
11JJ|1|18|G|588
11JJ|1|18|G|589
11JJ|1|18|A|590
11JJ|1|18|U|591
11JJ|1|18|C|592

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S9

40S ribosomal protein S9

Chain SS

40S ribosomal protein S24

Chain YY

40S ribosomal protein S30