HL_11JJ_017

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

11JJ|1|18|U|888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|18|U|885
11JJ|1|18|A|886
11JJ|1|18|U|887
11JJ|1|18|U|888
11JJ|1|18|U|889
11JJ|1|18|U|890
11JJ|1|18|G|891
11JJ|1|18|U|892
11JJ|1|18|U|893
11JJ|1|18|G|894
11JJ|1|18|G|895
11JJ|1|18|U|896
11JJ|1|18|U|897
11JJ|1|18|U|898
11JJ|1|18|U|899
11JJ|1|18|C|900
11JJ|1|18|G|901

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain S6

40S ribosomal protein S6