HL_11JJ_025

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

11JJ|1|18|U|1300, 11JJ|1|18|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_025 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.3603

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11JJ|1|18|A|1295
11JJ|1|18|U|1296
11JJ|1|18|U|1297
11JJ|1|18|G|1298
11JJ|1|18|A|1299
11JJ|1|18|U|1300
11JJ|1|18|A|1301
11JJ|1|18|G|1302
11JJ|1|18|C|1303
11JJ|1|18|U|1304

Current chains

Chain 18

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS19

Chain XX

40S ribosomal protein S29

Chain ZZ

40S ribosomal protein S27a