HL_11JJ_026

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_026 not in the Motif Atlas

Homologous match to HL_9H3G_101

Geometric discrepancy: 0.1443

The information below is about HL_9H3G_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11JJ|1|18|A|1353
11JJ|1|18|G|1354
11JJ|1|18|C|1355
11JJ|1|18|G|1356
11JJ|1|18|A|1357
11JJ|1|18|U|1358

Current chains

Chain 18

18S rRNA

Nearby chains

Chain BB

40S_SA_C domain-containing protein

Chain S2

40S ribosomal protein S2