HL_11JJ_038

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

11JJ|1|28|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_038 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.1679

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

11JJ|1|28|U|204
11JJ|1|28|C|205
11JJ|1|28|U|206
11JJ|1|28|G|207
11JJ|1|28|A|208
11JJ|1|28|U|209
11JJ|1|28|C|210
11JJ|1|28|G|211

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 32

Large ribosomal subunit protein eL32

Chain L4

60S ribosomal protein L4