HL_11JJ_040

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

11JJ|1|28|G|232, 11JJ|1|28|U|233, 11JJ|1|28|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_040 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.1843

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

11JJ|1|28|G|230
11JJ|1|28|U|231
11JJ|1|28|G|232
11JJ|1|28|U|233
11JJ|1|28|G|234
11JJ|1|28|A|235
11JJ|1|28|G|236
11JJ|1|28|G|237
11JJ|1|28|C|238

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4