HL_11JJ_049

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_049 not in the Motif Atlas

Homologous match to HL_8GLP_022

Geometric discrepancy: 0.1254

The information below is about HL_8GLP_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11JJ|1|28|G|1561
11JJ|1|28|G|1562
11JJ|1|28|A|1563
11JJ|1|28|A|1564
11JJ|1|28|A|1565
11JJ|1|28|C|1566

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain DD

Small ribosomal subunit protein uS17

Chain FF

40S ribosomal protein S13

Chain ff

60S ribosomal protein L37a