HL_11JJ_050

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

11JJ|1|28|U|1596, 11JJ|1|28|A|1600, 11JJ|1|28|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_050 not in the Motif Atlas

Homologous match to HL_8GLP_023

Geometric discrepancy: 0.0766

The information below is about HL_8GLP_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

11JJ|1|28|A|1593
11JJ|1|28|C|1594
11JJ|1|28|G|1595
11JJ|1|28|U|1596
11JJ|1|28|G|1597
11JJ|1|28|C|1598
11JJ|1|28|G|1599
11JJ|1|28|A|1600
11JJ|1|28|A|1601
11JJ|1|28|U|1602

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 37

60S ribosomal protein L37

Chain L3

60S ribosomal protein L3