HL_11JJ_051

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

11JJ|1|28|A|1630, 11JJ|1|28|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_051 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0624

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

11JJ|1|28|G|1627
11JJ|1|28|C|1628
11JJ|1|28|G|1629
11JJ|1|28|A|1630
11JJ|1|28|A|1631
11JJ|1|28|A|1632
11JJ|1|28|G|1633
11JJ|1|28|A|1634
11JJ|1|28|C|1635

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 37

60S ribosomal protein L37

Chain L8

60S ribosomal protein L8