HL_11JJ_071
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 11JJ|1|28|C|2794, 11JJ|1|28|G|2796, 11JJ|1|28|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11JJ_071 not in the Motif Atlas
- Homologous match to HL_8GLP_045
- Geometric discrepancy: 0.0812
- The information below is about HL_8GLP_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.4
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
11JJ|1|28|C|2792
11JJ|1|28|G|2793
11JJ|1|28|C|2794
11JJ|1|28|A|2795
11JJ|1|28|G|2796
11JJ|1|28|C|2797
11JJ|1|28|A|2798
11JJ|1|28|G|2799
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
- Chain L4
- 60S ribosomal protein L4
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