HL_11JJ_072

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

11JJ|1|28|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_072 not in the Motif Atlas

Homologous match to HL_9PN5_041

Geometric discrepancy: 0.1194

The information below is about HL_9PN5_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11JJ|1|28|U|2810
11JJ|1|28|G|2811
11JJ|1|28|A|2812
11JJ|1|28|A|2813
11JJ|1|28|C|2814
11JJ|1|28|A|2815
11JJ|1|28|G|2816

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19