HL_11JJ_077
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11JJ_077 not in the Motif Atlas
- Homologous match to HL_9PN5_046
- Geometric discrepancy: 0.0884
- The information below is about HL_9PN5_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
11JJ|1|28|A|3724
11JJ|1|28|G|3725
11JJ|1|28|A|3726
11JJ|1|28|A|3727
11JJ|1|28|A|3728
11JJ|1|28|U|3729
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 36
- 60S ribosomal protein L36
- Chain 42
- eL42
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