HL_11JJ_078
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 11JJ|1|28|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11JJ_078 not in the Motif Atlas
- Homologous match to HL_9H3G_052
- Geometric discrepancy: 0.3123
- The information below is about HL_9H3G_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.3
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11JJ|1|28|G|3757
11JJ|1|28|U|3758
11JJ|1|28|A|3759
11JJ|1|28|A|3760
11JJ|1|28|C|3761
11JJ|1|28|U|3762
11JJ|1|28|A|3763
11JJ|1|28|U|3764
11JJ|1|28|G|3765
11JJ|1|28|A|3766
11JJ|1|28|C|3767
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain IF
- IFRD2
- Chain v
- Elongation factor 2
Coloring options: