HL_11JJ_090

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_090 not in the Motif Atlas

Homologous match to HL_9PN5_061

Geometric discrepancy: 0.1206

The information below is about HL_9PN5_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

11JJ|1|28|U|4497
11JJ|1|28|U|4498
11JJ|1|28|G|4499
11JJ|1|28|U|4500
11JJ|1|28|U|4501
11JJ|1|28|C|4502
11JJ|1|28|A|4503

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L3

60S ribosomal protein L3