HL_11JJ_093
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAGGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11JJ_093 not in the Motif Atlas
- Homologous match to HL_8GLP_071
- Geometric discrepancy: 0.0544
- The information below is about HL_8GLP_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_12125.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
11JJ|1|28|U|4646
11JJ|1|28|G|4647
11JJ|1|28|A|4648
11JJ|1|28|G|4649
11JJ|1|28|G|4650
11JJ|1|28|A|4651
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 19
- 60S ribosomal protein L19
- Chain 22
- Large ribosomal subunit protein eL22
- Chain 31
- 60S ribosomal protein L31
Coloring options: