HL_11JJ_094

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

11JJ|1|28|G|4694, 11JJ|1|28|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_094 not in the Motif Atlas

Homologous match to HL_9H3G_068

Geometric discrepancy: 0.0737

The information below is about HL_9H3G_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

11JJ|1|28|C|4688
11JJ|1|28|U|4689
11JJ|1|28|G|4690
11JJ|1|28|A|4691
11JJ|1|28|A|4692
11JJ|1|28|C|4693
11JJ|1|28|G|4694
11JJ|1|28|C|4695
11JJ|1|28|C|4696
11JJ|1|28|U|4697
11JJ|1|28|C|4698
11JJ|1|28|U|4699
11JJ|1|28|A|4700
11JJ|1|28|A|4701
11JJ|1|28|G|4702

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13