HL_11JJ_102
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11JJ_102 not in the Motif Atlas
- Homologous match to HL_8QYX_073
- Geometric discrepancy: 0.0576
- The information below is about HL_8QYX_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
11JJ|1|6|G|86
11JJ|1|6|G|87
11JJ|1|6|A|88
11JJ|1|6|G|89
11JJ|1|6|A|90
11JJ|1|6|C|91
Current chains
- Chain 6
- 5S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 20
- Large ribosomal subunit protein eL20
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
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