HL_11KH_012
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11KH_012 not in the Motif Atlas
- Homologous match to HL_9PN5_090
- Geometric discrepancy: 0.1931
- The information below is about HL_9PN5_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11KH|1|18|A|569
11KH|1|18|C|570
11KH|1|18|U|571
11KH|1|18|U|572
11KH|1|18|U|573
11KH|1|18|A|574
11KH|1|18|A|575
11KH|1|18|A|576
11KH|1|18|U|577
11KH|1|18|C|578
11KH|1|18|C|579
11KH|1|18|U|580
11KH|1|18|U|581
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain S4
- 40S ribosomal protein S4
- Chain S9
- 40S ribosomal protein S9
- Chain SS
- 40S ribosomal protein S24
Coloring options: