HL_11KH_014

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

11KH|1|18|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_014 not in the Motif Atlas

Homologous match to HL_9PN5_092

Geometric discrepancy: 0.1601

The information below is about HL_9PN5_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

11KH|1|18|U|820
11KH|1|18|G|821
11KH|1|18|U|822
11KH|1|18|U|823
11KH|1|18|C|824
11KH|1|18|A|825
11KH|1|18|A|826
11KH|1|18|A|827
11KH|1|18|G|828

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S9

40S ribosomal protein S9

Chain SS

40S ribosomal protein S24