Motif HL_11974.4 Version HL_11974.4 of this group appears in releases 4.10 to 4.10

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	1-8	2-6	2-7
1	HL_9H3G_091	9H3G	0.7535	1		h1	SSU rRNA	U	767	C	769	U	770	C	771	A	772	A	773	A	774	G	775	cWW	tWH
2	HL_8CRE_207	8CRE	0.7285	1		CM	SSU rRNA	U	749	U	751	U	752	C	753	A	754	A	755	A	756	G	757	cWW	tWH
3	HL_9PN5_092	9PN5	0.7207	1		B5	SSU rRNA	U	764	PSU	766	U	767	C	768	A	769	A	770	A	771	G	772	cWW	tWH
4	HL_8GLP_099	8GLP	0.6942	1		S2	SSU rRNA	U	820	PSU	822	U	823	C	824	A	825	A	826	A	827	G	828	cWW	tWH
5	HL_4V9F_055	4V9F	0.0922	1	LSU P loop	0	LSU rRNA	C	2281	U	2282	G	2284	G	2285	G	2286	C	2287	G	2288	G	2289	cWW
6	HL_9DFE_051	9DFE	0.0816	1	LSU P loop	1A	LSU rRNA	C	2248	U	2249	OMG	2251	G	2252	G	2253	C	2254	G	2255	G	2256	cWW
7	HL_8B0X_080	8B0X	0.0624	1	LSU P loop	a	LSU rRNA	C	2252	U	2253	OMG	2255	G	2256	G	2257	C	2258	G	2259	G	2260	cWW
8	HL_9H3G_055	9H3G	0.0507	1		A	LSU rRNA	C	2615	U	2616	OMG	2618	G	2619	G	2620	C	2621	G	2622	G	2623	cWW
9	HL_8GLP_059	8GLP	0.0000	1	LSU P loop	L5	LSU rRNA	C	4193	U	4194	OMG	4196	G	4197	G	4198	C	4199	G	4200	G	4201	cWW
10	HL_9AXU_050	9AXU	0.0622	1	LSU P loop	2	LSU rRNA	C	2711	U	2712	G	2714	G	2715	G	2716	C	2717	G	2718	G	2719	cWW
11	HL_8OI5_050	8OI5	0.0793	1	LSU P loop	1	LSU rRNA	C	2588	U	2589	G	2591	G	2592	G	2593	C	2594	G	2595	G	2596	cWW
12	HL_9PN5_052	9PN5	0.0890	1		A1	LSU rRNA	C	2616	U	2617	G	2619	G	2620	G	2621	C	2622	G	2623	G	2624	cWW
13	HL_9E6Q_051	9E6Q	0.1318	1	LSU P loop	1	LSU rRNA	C	2359	U	2360	OMG	2362	G	2363	G	2364	C	2365	OMG	2366	G	2367	cWW
14	HL_4WF9_049	4WF9	0.0997	1	LSU P loop	X	LSU rRNA	C	2275	U	2276	G	2278	G	2279	G	2280	C	2281	G	2282	G	2283	cWW
15	HL_7A0S_052	7A0S	0.1187	1	LSU P loop	X	LSU rRNA	C	2227	U	2228	G	2230	G	2231	G	2232	C	2233	G	2234	G	2235	cWW
16	HL_4LCK_002	4LCK	0.5346	1	tRNA anticodon loop	B	tRNA	C	30	U	31	G	33	C	34	C	35	A	36	A	37	G	38	cWW
17	HL_6UGG_005	6UGG	0.4012	1	tRNA anticodon loop	B	tRNA	C	31	C	32	G	34	U	35	C	36	A	37	C	38	G	39	cWW		ncWB
18	HL_2AKE_002	2AKE	0.4768	1	tRNA anticodon loop	B	tRNA	A	31	C	32	C	34	C	35	A	36	G	37	A	38	U	39	cWW
19	HL_1J1U_002	1J1U	0.5418	1	tRNA anticodon loop	B	tRNA	A	532	C	533	G	535	U	536	A	537	G	538	A	539	U	540	cWW		ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGGGGCGG	6
CUG(OMG)GGCGG	2
CUGGGCGG	2
UGCUCAAAG	1
UGUUCAAAG	1
UG(PSU)UCAAAG	1
UGUCAAAG	1
CUG(OMG)GGC(OMG)G	1
CUUGCCAAG	1
CCUGUCACG	1
ACUCCAGAU	1
ACUGUAGAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGGGGCG	6
UG(OMG)GGCG	4
G(PSU)UCAAA	2
GCUCAAA	1
GUUCAAA	1
UG(OMG)GGC(OMG)	1
UUGCCAA	1
CUGUCAC	1
CUCCAGA	1
CUGUAGA	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: LSU P loop (9)
(6)
tRNA anticodon loop (4)
Basepair signature: cWW-F-F-F-F-F-F
Heat map statistics: Min 0.05 | Avg 0.43 | Max 0.99

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Coloring options: Nucleotide numbers

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