HL_11KH_017

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_017 not in the Motif Atlas

Homologous match to HL_9H3G_093

Geometric discrepancy: 0.1608

The information below is about HL_9H3G_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11KH|1|18|A|957
11KH|1|18|G|958
11KH|1|18|G|959
11KH|1|18|U|960
11KH|1|18|G|961
11KH|1|18|A|962
11KH|1|18|A|963
11KH|1|18|A|964
11KH|1|18|U|965
11KH|1|18|U|966

Current chains

Chain 18

18S rRNA

Nearby chains

Chain GG

Small ribosomal subunit protein uS11

Chain IF

IFRD2