Motif HL_38491.5 Version HL_38491.5 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10	1-10	2-9	3-8
1	HL_4TUE_223	4TUE	0.3517	0	XY	A-site ASL-SufJ	C	31	C	32	U	33	U	34	G	35	G	36	U	37	A	38	A	39	G	40	cWW	ncWB
2	HL_9G4P_001	9G4P	0.3720	0	B	RNA (33-MER)	G	14	A	15	U	16	U	17	G	18	U	19	C	20	A	21	C	22	C	23	cWW	ncWB
3	HL_9SUM_089	9SUM	0.3288	1	CA	SSU rRNA	G	967	A	968	U	969	C	970	A	971	G	972	A	973	A	975	C	976	C	977	cWW
4	HL_8CRE_212	8CRE	0.3327	1	CM	SSU rRNA	G	982	A	983	U	984	C	985	A	986	G	987	A	988	A	990	C	991	C	992	cWW
5	HL_4LFB_017	4LFB	0.3394	1	A	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
6	HL_8B0X_016	8B0X	0.3272	1	A	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
7	HL_9H3G_095	9H3G	0.3240	1	h1	SSU rRNA	G	998	A	999	PSU	1000	C	1001	A	1002	G	1003	A	1004	A	1006	C	1007	C	1008	cWW	ncWB
8	HL_9PN5_097	9PN5	0.3085	1	B5	SSU rRNA	G	997	A	998	PSU	999	C	1000	A	1001	G	1002	A	1003	A	1005	C	1006	C	1007	cWW	ncWB
9	HL_8GLP_104	8GLP	0.3365	1	S2	SSU rRNA	G	1054	A	1055	PSU	1056	C	1057	A	1058	G	1059	A	1060	A	1062	C	1063	C	1064	cWW	ncWB
10	HL_8B0X_014	8B0X	0.1054	0	A	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
11	HL_4LFB_015	4LFB	0.1177	0	A	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
12	HL_9H3G_093	9H3G	0.0813	0	h1	SSU rRNA	A	901	G	902	G	903	U	904	G	905	A	906	A	907	A	908	U	909	U	910	cWW	tSH	tSH
13	HL_9PN5_095	9PN5	0.0736	0	B5	SSU rRNA	A	900	G	901	G	902	U	903	G	904	A	905	A	906	A	907	U	908	U	909	cWW	tSH	tSH
14	HL_8CRE_210	8CRE	0.0000	0	CM	SSU rRNA	A	885	G	886	G	887	U	888	G	889	A	890	A	891	A	892	U	893	U	894	cWW	tSH	ntSH
15	HL_9SUM_087	9SUM	0.1272	0	CA	SSU rRNA	A	870	G	871	G	872	U	873	G	874	A	875	A	876	A	877	U	878	U	879	cWW	tSH	ntSH
16	HL_8GLP_126	8GLP	0.2327	0	S2	SSU rRNA	A	957	G	958	G	959	U	960	G	961	A	962	A	963	A	964	U	965	PSU	966	cWW	ntSH	tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
AGGUGAAAUU	4
GAUCAGAUACC	2
GAUUAGAUACC	2
GA(PSU)CAGAUACC	2
CGGUGAAAUG	2
CCUUGGUAAG	1
GAUUGUCACC	1
GACAGAUACC	1
AGGUGAAAU(PSU)	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGUGAAAU	7
A(PSU)CAGAUAC	3
AUCAGAUAC	2
AUUAGAUAC	2
CUUGGUAA	1
AUUGUCAC	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (16)
Basepair signature: cWW-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.05 | Avg 0.27 | Max 0.46

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Coloring options: Nucleotide numbers

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