HL_11KH_026

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

11KH|1|18|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_026 not in the Motif Atlas

Homologous match to HL_9PN5_104

Geometric discrepancy: 0.1307

The information below is about HL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

11KH|1|18|G|1366
11KH|1|18|U|1367
11KH|1|18|U|1368
11KH|1|18|A|1369
11KH|1|18|A|1370
11KH|1|18|U|1371
11KH|1|18|U|1372
11KH|1|18|C|1373

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RS

40S ribosomal protein S17