HL_63894.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	1-7	2-6	3-5
1	HL_9AXU_004	9AXU	0.4905	2		2	LSU rRNA	A	133	U	134	U	135	U	136	C	137	U	140	U	141	cWW
2	HL_8GLP_027	8GLP	0.3271	1		L5	LSU rRNA	C	1816	U	1817	G	1818	G	1819	C	1820	U	1822	G	1823	cWW	cwW
3	HL_3R4F_001	3R4F	0.1631	1	T-loop related	A	pRNA	A	24	U	25	U	26	G	27	A	28	U	30	U	31	cWW	cwW
4	HL_8OI5_008	8OI5	0.1029	3		1	LSU rRNA	U	278	U	279	U	280	G	281	G	282	U	286	G	287	cWW	cwW
5	HL_9H3G_012	9H3G	0.1133	3		A	LSU rRNA	U	275	U	276	PSU	277	G	278	G	279	U	283	G	284	cWW	cwW
6	HL_9AXU_008	9AXU	0.1120	3		2	LSU rRNA	U	286	U	287	U	288	G	289	G	290	U	294	G	295	cWW	cwW
7	HL_9PN5_008	9PN5	0.0982	3		A1	LSU rRNA	U	278	U	279	U	280	G	281	G	282	U	286	G	287	cWW	cwW
8	HL_8GLP_008	8GLP	0.0000	3		L5	LSU rRNA	C	289	U	290	U	291	G	292	G	293	U	297	G	298	cWW	cwW
9	HL_9AXU_022	9AXU	0.1188	1	T-loop related (H)	2	LSU rRNA	C	1108	U	1109	U	1110	A	1111	A	1112	U	1114	G	1115	cWW	cwW
10	HL_9H3G_030	9H3G	0.1480	1		A	LSU rRNA	C	1086	U	1087	U	1088	U	1089	G	1090	U	1092	G	1093	cWW	cwW
11	HL_9PN5_023	9PN5	0.1920	1		A1	LSU rRNA	C	1076	U	1077	U	1078	A	1079	A	1080	U	1082	G	1083	cWW	cwW
12	HL_8OI5_023	8OI5	0.1804	1		1	LSU rRNA	C	1072	U	1073	U	1074	A	1075	A	1076	U	1078	G	1079	cWW	cwW
13	HL_8CRE_219	8CRE	0.1480	1	T-loop related	CM	SSU rRNA	C	1294	U	1295	U	1296	A	1297	A	1298	U	1300	G	1301	cWW	cwW
14	HL_9PN5_104	9PN5	0.1601	1		B5	SSU rRNA	C	1309	U	1310	U	1311	A	1312	A	1313	U	1315	G	1316	cWW	cwW
15	HL_9H3G_102	9H3G	0.1365	1		h1	SSU rRNA	G	1310	U	1311	U	1312	A	1313	A	1314	U	1316	C	1317	cWW	cwW
16	HL_8B0X_022	8B0X	0.1194	1	T-loop related (H)	A	SSU rRNA	G	1089	U	1090	U	1091	A	1092	A	1093	U	1095	C	1096	cWW	cwW
17	HL_4LFB_025	4LFB	0.1396	1	T-loop related	A	SSU rRNA	G	1089	U	1090	U	1091	A	1092	A	1093	U	1095	C	1096	cWW	cwW
18	HL_8GLP_111	8GLP	0.3155	1		S2	SSU rRNA	G	1366	PSU	1367	U	1368	A	1369	A	1370	U	1372	C	1373	cWW	cwW
19	HL_1QTQ_002	1QTQ	0.5571	2	tRNA anticodon loop with synthetase	B	tRNA	A	931	U	932	U	933	U	935	A	937	U	938	U	939	cWW		tSH
20	HL_4JXZ_002	4JXZ	0.5615	2	tRNA anticodon loop with synthetase	B	tRNA	U	931	U	932	U	933	U	935	A	937	U	938	A	939	cWW		ntSH
21	HL_6GSK_204	6GSK	0.7230	2	T-loop	1K	tRNA	G	53	5MU	54	PSU	55	G	57	A	58	U	60	C	61	ncWW		ntWH
22	HL_4WF9_019	4WF9	0.6390	2	Other HL	X	LSU rRNA	C	654	A	655	G	656	U	657	A	659	U	661	G	662	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUAAUUG	5
UUUGGGAAUG	3
GUUAAGUC	2
AUUUCUUUU	1
CUGGCGUG	1
AUUGAGUU	1
UU(PSU)GGGAAUG	1
CUUGGGAAUG	1
CUUUGUUG	1
GUUAAUUC	1
GUAAUUC	1
AUUCUGAUU	1
UUUUUGAUA	1
G(5MU)(PSU)CGACUC	1
CAGUAAAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAAUU	6
UUGGGAAU	4
UUAAGU	2
UUUCUUU	1
UGGCGU	1
UUGAGU	1
U(PSU)GGGAAU	1
UUUGUU	1
(PSU)UAAUU	1
UUCUGAU	1
UUUUGAU	1
(5MU)(PSU)CGACU	1
AGUAAAU	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_63894.4 Version HL_63894.4 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_63894.4 Version HL_63894.4 of this group appears in releases 4.10 to 4.10

Download

Csv

Json